L'école doctorale SDSV

Le doctorat


Direction de thèse

Liens utiles

Les doctorants sont fortement encouragés à envoyer leurs publications au secrétariat de l'ED, pour publication sur le site. Adressez-les nous dès qu'elles sont acceptées !



Les publications sont classées en ordre alphabétique de premier auteur. Le nom des doctorants SDSV est en gras.
Seules figurent les publications acceptées ou publiées.



- Araujo LM, Fert I, Jouhault Q, Labroquère K, Andrieu M, Chiocchia G, Breban M. (2014) Increased production of interleukin-17 over interleukin-10 by treg cells implicates inducible costimulator molecule in experimental spondyloarthritis. Arthritis Rheumatol. 2014 Sep;66(9):2412-22. doi: 10.1002/art.38737.

- Boussadia B, Ghosh C, Plaud C, Pascussi JM, de Bock F, Rousset MC, Janigro D, Marchi N (2014) Effect of status epilepticus and antiepileptic drugs on CYP2E1 brain expression. Neuroscience, 281:124-34

- Boutard M, Cerisy T, Nogue PY, Alberti A, Weissenbach J, Salanoubat M, Tolonen AC. (2014)Functional diversity of carbohydrate-active enzymes enabling a bacterium to ferment plant biomass. PLoS Genet, 10(11):e1004773. doi: 10.1371/journal.pgen.1004773. eCollection 2014 Nov.

- Brandstaetter AS, Bastin F, Sandoz JC. (2014) Honeybee drones are attracted by groups of consexuals in a walking simulator. J Exp Biol, 217(Pt 8):1278-85. doi: 10.1242/jeb.094292. Epub 2014 Jan 16.

- Bretes H, Rouviere JO, Leger T, Oeffinger M, Devaux F, Doye V, Palancade B. (2014) Sumoylation of the THO complex regulates the biogenesis of a subset of mRNPs. Nucleic Acids Res, 42(8):5043-58. doi: 10.1093/nar/gku124

- Cadart C, Zlotek-Zlotkiewicz E, Le Berre M, Piel M, Matthews HK. (2014) Exploring the function of cell shape and size during mitosis. Dev Cell, 29(2):159-69. doi: 10.1016/j.devcel.2014.04.009. Review.

- Cassier-Chauvat C, Veaudor T, Chauvat F. (2014) Advances in the function and regulation of hydrogenase in the cyanobacterium Synechocystis PCC6803. Int J Mol Sci, 15(11):19938-51. doi: 10.3390/ijms151119938. Review.

- Chalhoub B,..., Thi VH, ... Wincker P. (2014) Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome. Science, 345(6199):950-3. doi: 10.1126/science.1253435. Epub 2014 Aug 21.

- Clavier A., Baillet A., Rincheval-Arnold A., Coléno-Costes A., Lasbleiz C., Mignotte B., Guénal I. (2014) The pro-apoptotic activity of Drosophila Rbf1 involves dE2F2-dependent downregulation of diap1 and buffy mRNA. Cell Death Dis. 5, e1405; doi:10.1038/cddis.2014.372.

- Colin J, Candelli T, Porrua O, Boulay J, Zhu C, Lacroute F, Steinmetz LM, Libri D. (2015) Roadblock termination by reb1p restricts cryptic and readthrough transcription. Mol Cell, 56(5):667-80. doi: 10.1016/j.molcel.2014.10.026.

- Colombat M, Holifanjaniaina S, Hirschi S, Mal H, Stern M. (2014) Histologic reconstruction of bronchiolar lesions in lung transplant patients with bronchiolitis obliterans syndrome. Am J Surg Pathol, 38(8):1157-8. doi: 10.1097/PAS.0000000000000181

- Couto A., Monceau K., Bonnard O., Thiéry D., Sandoz J.C. (2014). Olfactory attraction of the hornet Vespa velutina to honeybee colony odors and pheromones. PLoS ONE, 9 (12) e115943, 1-19.

- Davido B, Dinh A, Lagrange A, Mellon G, de Truchis P, Perronne C, Cremieux AC. (2014) Chronic gonococcal arthritis with C5 deficiency presenting with brief flare-ups: case study and literature review. Clin Rheumato, 33(9):1351-3. doi: 10.1007/s10067-014-2643-x. Epub 2014 Apr 29. Review.

- Daynac M, Pineda JR, Chicheportiche A, Gauthier LR, Morizur L, Boussin FD, Mouthon MA. (2014) TGFβ lengthens the G1 phase of stem cells in aged mouse brain. Stem Cells, 32(12):3257-65. doi: 10.1002/stem.1815.

- Demay Y, Perochon J, Szuplewski S, Mignotte B, Gaumer S. (2014) The PERK pathway independently triggers apoptosis and a Rac1/Slpr/JNK/Dilp8 signaling favoring tissue homeostasis in a chronic ER stress Drosophila model. Cell Death Dis, 5:e1452. doi: 10.1038/cddis.2014.403.

- Gordel M, Olesiak-Banska J, Matczyszyn K, Nogues C, Buckle M, Samoc M. (2014) Post-synthesis reshaping of gold nanorods using a femtosecond laser. Phys Chem Chem Phys, 16(1):71-8. doi: 10.1039/c3cp53457j.

- Figueroa-Bossi N, Schwartz A, Guillemardet B, D'Heygère F, Bossi L, Boudvillain M. (2014) RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination. Genes Dev, 28(11):1239-51. doi: 10.1101/gad.240192.114.

- Frei dit Frey N, Garcia AV, Bigeard J, Zaag R, Bueso E, Garmier M, Pateyron S, de Tauzia-Moreau ML, Brunaud V, Balzergue S, Colcombet J, Aubourg S, Martin-Magniette ML, Hirt H. (2014) Functional analysis of Arabidopsis immune-related MAPKs uncovers a role for MPK3 as negative regulator of inducible defences. Genome Biol, 15(6):R87. doi: 10.1186/gb-2014-15-6-r87.

- Gatin L, Saleh-Mghir A, Tasse J, Ghout I, Laurent F, Crémieux AC. (2014) Ceftaroline-Fosamil efficacy against methicillin-resistant Staphylococcus aureus in a rabbit prosthetic joint infection model. Antimicrob Agents Chemother, 58(11):6496-500. doi: 10.1128/AAC.03600-14.

- Giorgetti L, Galupa R, Nora EP, Piolot T, Lam F, Dekker J, Tiana G, Heard E. (2014) Predictive polymer modeling reveals coupled fluctuations in chromosome conformation and transcription. Cell, 157(4):950-63. doi: 10.1016/j.cell.2014.03.025.

- Figueroa-Bossi N, Schwartz A, Guillemardet B, D'Heygère F, Bossi L, Boudvillain M. (2014) RNA remodeling by bacterial global regulator CsrA promotes Rho-dependent transcription termination. Genes Dev, 28(11):1239-51. doi: 10.1101/gad.240192.114.

- Helleu Q, Gérard PR, Montchamp-Moreau C. (2014) Sex chromosome drive. Cold Spring Harb Perspect Biol, 7(2):a017616. doi: 10.1101/cshperspect.a017616.

- Hiriart E, van Vliet P, Dirschinger RJ, Evans SM, Puceat M. (2014) Cell labeling and injection in developing embryonic mouse hearts. J Vis Exp, (86). doi: 10.3791/51356.

- Holic N, Seye AK, Majdoul S, Martin S, Merten OW, Galy A, Fenard D. (2014) Influence of mildly acidic pH conditions on the production of lentiviral and retroviral vectors. Hum Gene Ther Clin Dev, 25(3):178-85. doi: 10.1089/humc.2014.027.

- Jenzer C, Manil-Ségalen M, Lefebvre C, Largeau C, Glatigny A, Legouis R. (2014) Human GABARAP can restore autophagosome biogenesis in a C. elegans lgg-1 mutant. Autophagy, 10(10):1868-72. doi: 10.4161/auto.29745

- Junca P., Carcaud J., Moulin S., Garnery L., Sandoz J.C. (2014). Genotypic influence on aversive conditioning in honeybees, using a novel thermal reinforcement procedure. PLoS ONE, 9 (5) e97333, 1-13.

- Latino L, Essoh C, Blouin Y, Vu Thien H, Pourcel C. (2014) A novel Pseudomonas aeruginosa bacteriophage, Ab31, a chimera formed from temperate phage PAJU2 and P. putida lytic phage AF: characteristics and mechanism of bacterial resistance. PLoS One, 9(4):e93777. doi: 10.1371/journal.pone.0093777.

- Manil-Ségalen M, Lefebvre C, Jenzer C, Trichet M, Boulogne C, Satiat-Jeunemaitre B, Legouis R. (2014) The C. elegans LC3 acts downstream of GABARAP to degrade autophagosomes by interacting with the HOPS subunit VPS39. Dev Cell, 28(1):43-55. doi: 10.1016/j.devcel.2013.11.022. Erratum in: Dev Cell, 30(1):110.

- Midonet C, Barre FX. (2014) Xer Site-Specific Recombination: Promoting Vertical and Horizontal Transmission of Genetic Information. Microbiol Spectr, 2(6). doi: 10.1128/microbiolspec.MDNA3-0056-2014. Review.

- Midonet C, Das B, Paly E, Barre FX (2014) XerD-mediated FtsK-independent integration of TLCϕ into the Vibrio cholerae genome. Proc Natl Acad Sci U S A. 2014 Nov 25;111(47):16848-53. doi: 10.1073/pnas.1404047111

- Parvy JP, Wang P, Garrido D, Maria A, Blais C, Poidevin M, Montagne J. (2014) Forward and feedback regulation of cyclic steroid production in Drosophila melanogaster. Development, 141(20):3955-65. doi: 10.1242/dev.102020.

- Milesi 1, Boussadia B, Plaud C, Catteau M, Rousset MC, De Bock F, Schaeffer M, Lerner-Natoli M, Rigau V, Marchi N (2014) Redistribution of PDGFRβ cells and NG2DsRed pericytes at the cerebrovasculature after status epilepticus. Neurobiol Dis, 71:151-8

- Moindjie H, Santos ED, Loeuillet L, Gronier H, de Mazancourt P, Barnea ER, Vialard F, Dieudonne MN. (2014) Preimplantation factor (PIF) promotes human trophoblast invasion. Biol Reprod, 91(5):118. doi: 10.1095/biolreprod.114.119156.

- Nguyen N.A. & Jacq A. (2014) sRNAs in the vibrionaceae: an ocean still to be explored. Wiley Interdiscip Rev RNA. 2014 Jan 23. doi: 10.1002/wrna.1218

- Oberto J, Gaudin M, Cossu M, Gorlas A, Slesarev A, Marguet E, Forterre P. (2014) Genome Sequence of a Hyperthermophilic Archaeon, Thermococcus nautili 30-1, That Produces Viral Vesicles. Genome Announc. 2014 Mar 27;2(2). pii: e00243-14. doi: 10.1128/genomeA.00243-14.

- Rocha C, Papon L, Cacheux W, Marques Sousa P, Lascano V, Tort O, Giordano T, Vacher S, Lemmers B, Mariani P, Meseure D, Medema JP, Bièche I, Hahne M, Janke C. (2014) Tubulin glycylases are required for primary cilia, control of cell proliferation and tumor development in colon. EMBO J, 33(19):2247-60. doi: 10.15252/embj.201488466. Erratum in: EMBO J. 33(22):2735.

- Scalvenzi T, Pollet N. (2014) Insights on genome size evolution from a miniature inverted repeat transposon driving a satellite DNA. Mol Phylogenet Evol, 81:1-9. doi: 10.1016/j.ympev.2014.08.014.

- Sorokina M, Medigue C, Vallenet D. (2015) A new network representation of the metabolism to detect chemical transformation modules. BMC Bioinformatics, 16:385. doi: 10.1186/s12859-015-0809-4.

- Sorokina M, Stam M, Médigue C, Lespinet O, Vallenet D. (2014) Profiling the orphan enzymes. Biol Direct, 9:10. doi: 10.1186/1745-6150-9-10. Review.

- Tanner SJ, Ariza A, Richard CA, Kyle HF, Dods RL, Blondot ML, Wu W, Trincão J, Trinh CH, Hiscox JA, Carroll MW, Silman NJ, Eléouët JF, Edwards TA, Barr JN. (2014) Crystal structure of the essential transcription antiterminator M2-1 protein of human respiratory syncytial virus and implications of its phosphorylation. Proc Natl Acad Sci U S A, 111(4):1580-5. doi: 10.1073/pnas.1317262111. Epub 2014 Jan 13.

- Veillard AC, Marks H, Bernardo AS, Jouneau L, Laloë D, Boulanger L, Kaan A, Brochard V, Tosolini M, Pedersen R, Stunnenberg H, Jouneau A. (2014) Stable methylation at promoters distinguishes epiblast stem cells from embryonic stem cells and the in vivo epiblasts. Stem Cells Dev, 23(17):2014-29. doi: 10.1089/scd.2013.0639

- Xu X, Ben Imeddourene A, Zargarian L, Foloppe N, Mauffret O, Hartmann B. (2014) NMR studies of DNA support the role of pre-existing minor groove variations in nucleosome indirect readout. Biochemistry, 53(35):5601-12. doi: 10.1021/bi500504y.




- Boissart C, Poulet A, Georges P, Darville H, Julita E, Delorme R, Bourgeron T, Peschanski M, Benchoua A. (2013) Differentiation from human pluripotent stem cells of cortical neurons of the superficial layers amenable to psychiatric disease modeling and high-throughput drug screening. Transl Psychiatry, 3:e294. doi: 10.1038/tp.2013.71.

- Colombat M, Holifanjaniaina S, Guillonneau F, Mal H, Hirschi S, Reynaud-Gaubert M, Stern M. (2013)  Mass spectrometry-based proteomic analysis: a good diagnostic tool for cystic lung light chain deposition disease. Am J Respir Crit Care Med, 188(3):404-5. doi: 10.1164/rccm.201301-00714.

- Das B, Martínez E, Midonet C, Barre FX. (2013) Integrative mobile elements exploiting Xer recombination. Trends Microbiol, 21(1):23-30. doi: 10.1016/j.tim.2012.10.003

- Devigne A, Mersaoui S, Bouthier-de-la-Tour C, Sommer S, Servant P. (2013) The PprA protein is required for accurate cell division of γ-irradiated Deinococcus radiodurans bacteria. DNA Repair (Amst), 12(4):265-72. doi: 10.1016/j.dnarep.2013.01.004

- Eyboulet F, Cibot C, Eychenne T, Neil H, Alibert O, Werner M, Soutourina J. (2013) Mediator links transcription and DNA repair by facilitating Rad2/XPG recruitment. Genes Dev, 27(23):2549-62. doi: 10.1101/gad.225813.113.

- Gruel G, Grégoire E, Lecas S, Martin C, Roch-Lefevre S, Vaurijoux A, Voisin P, Voisin P, Barquinero JF (2013) Biological dosimetry by automated dicentric scoring in a simulated emergency. Radiat Res, 179(5):557-69. doi: 10.1667/RR3196.1.

- Hanachi M, Melchior JC, Crenn P. (2013) Hypertransaminasemia in severely malnourished adult anorexia nervosa patients: risk factors and evolution under enteral nutrition. Clin Nutr, 32(3):391-5. doi: 10.1016/j.clnu.2012.08.020. Epub 2012 Aug 31.

- Langevin C, Aleksejeva E, Passoni G, Palha N, Levraud JP, Boudinot P. (2013) The antiviral innate immune response in fish: evolution and conservation of the IFN system. J Mol Biol, 425(24):4904-20. doi: 10.1016/j.jmb.2013.09.033

- Nosel I, Vaurijoux A, Barquinero JF, Gruel G (2013) Characterization of gene expression profiles at low and very low doses of ionizing radiation. DNA Repair (Amst), 12(7):508-17. doi: 10.1016/j.dnarep.2013.04.021.

- Rouvière JO, Geoffroy MC, Palancade B. (2013) Multiple crosstalks between mRNA biogenesis and SUMO. Chromosoma, 122(5):387-99. doi: 10.1007/s00412-013-0408-y.

- Toffano-Nioche C., Ott A., Crozat E., Nguyen N.A., Zytnicki M., Leclerc F., Forterre P., Bouloc P. & Gautheret D. (2013) RNA at 92°C: the Non-Coding Transcriptome of the Hyperthermophilic Archaeon Pyrococcus abyssi. RNA Biol.



- Bossi L, Schwartz A, Guillemardet B, Boudvillain M, Figueroa-Bossi N (2012) A role for Rho-dependent polarity in gene regulation by a noncoding small RNA. Genes Dev, 26(16):1864-73. doi: 10.1101/gad.195412.112.

- Toffano-Nioche C.*, Nguyen N.A.*, Kuchly C., Ott A., Gautheret D., Bouloc P. & Jacq A. (2012) Transcriptomic profiling of the oyster pathogen Vibrio splendidus opens a window on the evolutionary dynamics of the small RNA repertoire in the Vibrio genus. RNA PMC3504672



- Erauso G.*, Lakhal F.*, Bidault-Toffin A., Le Chevalier P., Bouloc P., Paillard C. & Jacq A. (2011) Evidence for the role of horizontal transfer in generating pVT1, a large mosaic conjugative plasmid from the clam pathogen, Vibrio tapetis. PLoS One 6(2): e16759 . PMC3504672

- Ropartz D, Bodet PE, Przybylski C, Gonnet F, Daniel R, Fer M, Helbert W, Bertrand D, Rogniaux H. (2011) Performance evaluation on a wide set of matrix-assisted laser desorption ionization matrices for the detection of oligosaccharides in a high-throughput mass spectrometric screening of carbohydrate depolymerizing enzymes. Rapid Commun Mass Spectrom, 25(14):2059-70. doi: 10.1002/rcm.5060.