L'école doctorale SDSV

Le doctorat


Direction de thèse

Liens utiles

Les doctorants sont fortement encouragés à envoyer leurs publications au secrétariat de l'ED, pour publication sur le site. Adressez-les nous dès qu'elles sont acceptées !



Les publications sont classées en ordre alphabétique de premier auteur. Le nom des doctorants SDSV est en gras.
Seules figurent les publications acceptées ou publiées.


- Abboud N, Moore-Morris T, Hiriart E, Yang H, Bezerra H, Gualazzi MG, Stefanovic S, Guénantin AC, Evans SM, Pucéat M. (2015) A cohesin-OCT4 complex mediates Sox enhancers to prime an early embryonic lineage. Nat Commun, 8 6 6749. doi: 10.1038/ncomms7749.

- Abrial C, Grassin-Delyle S, Salvator H, Brollo M, Naline E, Devillier P. (2015) 15-Lipoxygenases regulate the production of chemokines in human lung macrophages. Br J Pharmacol, 172(17):4319-30. doi: 10.1111/bph.13210. Epub 2015 Jul 14.

- Alemasova EE, Pestryakov PE, Sukhanova MV, Kretov DA, Moor NA, Curmi PA, Ovchinnikov LP, Lavrik OI. (2015) Poly(ADP-ribosyl)ation as a new posttranslational modification of YB-1. Biochimie, 119:36-44. doi: 10.1016/j.biochi.2015.10.008.

- Azabou E, Magalhaes E, Braconnier A, Yahiaoui L, Moneger G, Heming N, Annane D, Mantz J, ChrétienF, Durand MC, Lofaso F, Porcher R, Sharshar T; Groupe d'Explorations Neurologiques en Réanimation (GENER) (2015). Early Standard Electroencephalogram Abnormalities Predict Mortality in Septic Intensive Care Unit Patients. PLoS One, 10(10):e0139969. doi: 0.1371/journal.pone.0139969

- Bakala N'Goma JC, Le Moigne V, Soismier N, Laencina L, Le Chevalier F, Roux AL, Poncin I, Serveau-Avesque C, Rottman M, Gaillard JL, Etienne G, Brosch R, Herrmann JL, Canaan S, Girard-Misguich F. (2015) Mycobacterium abscessus phospholipase C expression is induced during coculture within amoebae and enhances M. abscessus virulence in mice. Infect Immun, 83(2):780-91. doi: 10.1128/IAI.02032-14. Epub 2014 Dec 8.

- Ben Imeddourene A, Elbahnsi A, Guéroult M, Oguey C, Foloppe N, Hartmann B (2015) Simulations Meet Experiment to Reveal New Insights into DNA Intrinsic Mechanics. Plos Computational Biology,

- Bernut A, Dupont C, Sahuquet A, Herrmann JL, Lutfalla G, Kremer L. (2015) Deciphering and Imaging Pathogenesis and Cording of Mycobacterium abscessus in Zebrafish Embryos. J Vis Exp. 2015 Sep 9;(103). doi: 10.3791/53130.

- Blanchet S, Rowe M, Von der Haar T, Fabret C, Demais S, Howard MJ, Namy O. (2015) New insights into stop codon recognition by eRF1. Nucleic Acids Res, 1;43(6):3298-308. doi: 10.1093/nar/gkv154.

- Boca M, Kretov DA, Desforges B, Mephon-Gaspard A, Curmi PA, Pastré D. (2015) Probing protein interactions in living mammalian cells on a microtubule bench. Sci Rep, 27;5:17304. doi: 10.1038/srep17304.

- Boucrot E, Ferreira AP, Almeida-Souza L, Debard S, Vallis Y, Howard G, Bertot L, Sauvonnet N, McMahon HT. (2015) Endophilin marks and controls a clathrin-independent endocytic pathway. Nature, 517(7535):460-5. doi: 10.1038/nature14067.

- Bouhlel IB, Scheffler K, Tran PT, Paoletti A. (2017) Cell cycle control of spindle pole body duplication and splitting by Sfi1 and Cdc31 in fission yeast. Methods Cell Bio, 129:383-92. doi: 10.1016/bs.mcb.2015.03.005. Epub 2015 May 27.

- Bouhlel IB, Ohta M, Mayeux A, Bordes N, Dingli F, Boulanger J, Velve Casquillas G, Loew D, Tran PT, Sato M, Paoletti A. (2015) Cell cycle control of spindle pole body duplication and splitting by Sfi1 and Cdc31 in fission yeast. J Cell Sci,  pii: jcs.159657. [Epub ahead of print]

- Santos DB, Boussaid G, Stojkovic T, Orlikowski D, Letilly N, Behin A, Butel S, Lofaso F, Prigent H. (2015) Respiratory muscle dysfunction in facioscapulohumeral muscular dystrophy. Neuromuscul Disord, 25(8):632-9. doi: 10.1016/j.nmd.2015.04.011. Epub 2015 Apr 30.

- Briolotti P, Chaloin L, Balaguer P, Da Silva F, Tománková V, Pascussi JM, Duret C, Fabre JM, Ramos J, Klieber S, Maurel P, Daujat-Chavanieu M, Gerbal-Chaloin S. (2015) Analysis of Glycogen Synthase Kinase Inhibitors That Regulate Cytochrome P450 Expression in Primary Human Hepatocytes by Activation of β-Catenin, Aryl Hydrocarbon Receptor and Pregnane X Receptor Signaling. Toxicol Sci, 148(1):261-75. doi: 10.1093/toxsci/kfv177.

- Chennoufi R, Bougherara H, Gagey-Eilstein N, Dumat B, Henry E, Subra F, Mahuteau-Betzer F, Tauc P, Teulade-Fichou M.-P and Deprez E (2015) Differential Behaviour of Cationic Triphenylamine Derivatives in Fixed and Living Cells. Chem Commun (Camb, 51(80):14881-4. doi: 10.1039/c5cc05970d.

- Cholé H., Junca P., Sandoz J.C. (2015). Appetitive but not aversive olfactory conditioning modifies antennal movements in honey bees. Learning and Memory, 22, 604-616.

- Clavier A, Ruby V, Rincheval-Arnold A, Mignotte B, Guénal I. (2015) The Drosophila retinoblastoma protein, Rbf1, induces a Debcl- and Drp1-dependent mitochondrial apoptosis. J Cell Sci, 128(17):3239-49. doi: 10.1242/jcs.169896.

- Colombo BM, Scalvenzi T, Benlamara S, Pollet N. (2015) Microbiota and mucosal immunity in amphibians. Front Immunol. 2015 Mar 13;6:111. doi: 10.3389/fimmu.2015.00111.

- Colombat M, Holifanjaniaina S, Onifarasoaniaina S, Valleix S, Maisonneuve H, Kahn JE; plateforme protéomique de l'université Paris Descartes (3P5) (2015) Proteomics, a new tool for an accurate typing of amyloidosis. Rev Med Interne, 36(5):346-51. doi: 10.1016/j.revmed.2014.11.006

- Cossu M, Da Cunha V, Toffano-Nioche C, Forterre P, Oberto J. (2015) Comparative genomics reveals conserved positioning of essential genomic clusters in highly rearranged Thermococcales chromosomes. Biochimie, 118:313-21. doi: 10.1016/j.biochi.2015.07.008

- Da Silva L, Maurel M.-C. and Deamer D. (2015) Salt-promoted synthesis of RNA-like molecules in simulated hydrothermal conditions. J Mol Evol, 80:86-97.

- Davì V, Minc N. (2015) Mechanics and morphogenesis of fission yeast cells. Curr Opin Microbio, 28:36-45. doi: 10.1016/j.mib.2015.07.010. Epub 2015 Aug 26. Review.

- Daynac M, Morizur L, Kortulewski T, Gauthier LR, Ruat M, Mouthon MA, Boussin FD. (2015) Cell Sorting of Neural Stem and Progenitor Cells from the Adult Mouse Subventricular Zone and Live-imaging of their Cell Cycle Dynamics. J Vis Exp, (103). doi: 10.3791/53247.

- Dehman A, Ambroise C, Neuvial P. (2015) Performance of a blockwise approach in variable selection using linkage disequilibrium information. BMC Bioinformatics, 16:148. doi: 10.1186/s12859-015-0556-6.

- Delplanque A, Wawrzynczyk D, Jaworski P, Matczyszyn K, Pawlik K, Buckle M, Nyk M, Nogues C, Samoc M (2015) DNA Base Pair Resolution Measurements Using Resonance Energy Transfer Efficiency in Lanthanide Doped Nanoparticles. PLoS ONE,

- Devigne A, Ithurbide S, Bouthier de la Tour C, Passot F, Mathieu M, Sommer S, Servant P. (2015) DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistant Deinococcus radiodurans bacterium. Mol Microbiol, 96(5):1069-84. doi: 10.1111/mmi.12991.

- Dos Santos E, Duval F, Vialard F, Dieudonné MN. (2015) The roles of leptin and adiponectin at the fetal-maternal interface in humans. Horm Mol Biol Clin Investig, 24(1):47-63. doi: 10.1515/hmbci-2015-0031. Review

- Elbahnsi A, Mauffret O, Perahia D, Hartmann B, Oguey C. (2015) 25 New insights on nucleic acids - protein interfaces revealed by VLDM, a geometrical approach. J Biomol Struct Dyn, 33 Suppl 1:14-5. doi: 10.1080/07391102.2015.1032565.

- Essoh C, Latino L, Midoux C, Blouin Y, Loukou G, Nguetta SP, Lathro S, Cablanmian A, Kouassi AK, Vergnaud G, Pourcel C (2015) Investigation of a Large Collection of Pseudomonas aeruginosa Bacteriophages Collected from a Single Environmental Source in Abidjan, Côte d'Ivoire. PLoS One, 10(6):e0130548. doi: 10.1371/journal.pone.0130548

- Eyboulet F., Wydau S., Eychenne T., Alibert O., Neil H.,Boschiero C., Nevers MC., Volland H, Cornu D., Redeker V., Werner M. and Soutourina J. (2015) Mediator independently orchestrates multiple steps of preinitiation complex assembly in vivo. Nucleic Acids Research, 43 (19): 9214-9231.

- Galloux M, Gabiane G, Sourimant J, Richard CA, England P, Moudjou M, Aumont-Nicaise M, Fix J, Rameix-Welti MA, Eléouët JF. (2015) Identification and characterization of the binding site of the respiratory syncytial virus phosphoprotein to RNA-free nucleoprotein. J Virol, 89(7):3484-96. doi: 10.1128/JVI.03666-14. Epub 2015 Jan 7.

- Galupa R, Heard E. (2015) X-chromosome inactivation : new insights into cis and trans regulation. Curr Opin Genet Dev 31:57-66.

- Galloux M, Gabiane G, Sourimant J, Richard CA, England P, Moudjou M, Aumont-Nicaise M, Fix J, Rameix-Welti MA, Eléouët JF. (2015) Identification and characterization of the binding site of the respiratory syncytial virus phosphoprotein to RNA-free nucleoprotein. J Virol, 89(7):3484-96. doi: 10.1128/JVI.03666-14. Epub 2015 Jan 7.

- Garrido D, Rubin T, Poidevin M, Maroni B, Le Rouzic A, Parvy J-P, et al. (2015) Fatty Acid Synthase Cooperates with Glyoxalase 1 to Protect against Sugar Toxicity. PLoS Genet 11(2): e1004995. doi:10.1371/journal.pgen.1004995

- Gatin L, Saleh-Mghir A, Massin P, Crémieux AC. (2015) Critical analysis of experimental models of periprosthetic joint infection. Orthop Traumatol Surg Res, 101(7):851-5. doi: 10.1016/j.otsr.2015.08.007. Review.

- Gordel M, Piela K, Kołkowski R, Koźlecki T, Buckle M, Samoć M. (2015) End-to-end self-assembly of gold nanorods in isopropanol solution: experimental and theoretical studies.J Nanopart Res. 17:477.

- Hinaux H, Blin M, Fumey J, Legendre L, Heuzé A, Casane D, Rétaux S. (2015) Lens defects in Astyanax mexicanus Cavefish: evolution of crystallins and a role for alphaA-crystallin. Dev Neurobiol, 75(5):505-21. doi: 10.1002/dneu.22239.

- Jacques IB, Moutiez M, Witwinowski J, Darbon E, Martel C, Seguin J, Favry E, Thai R, Lecoq A, Dubois S, Pernodet JL, Gondry M, Belin P. (2015) Analysis of 51 cyclodipeptide synthases reveals the basis for substrate specificity. Nat Chem Biol. 2015 Sep;11(9):721-7. doi: 10.1038/nchembio.1868

- Jenzer C, Simionato E and Legouis R. (2015) Tools and methods to analyze autophagy in C. elegans. Methods 75:162-71

- Junca P., Sandoz J.C. (2015). Heat perception and aversive learning in honey bees: putative involvement of the thermal/chemical sensor AmHsTRPA. Frontiers in Physiology, 6: 316, 1-15.

- Kretov DA, Curmi PA, Hamon L, Abrakhi S, Desforges B, Ovchinnikov LP, Pastré D. (2015) mRNA and DNA selection via protein multimerization: YB-1 as a case study. Nucleic Acids Res, 43(19):9457-73. doi: 10.1093/nar/gkv822

- Li J, Drubay D, Michiels S, Gautheret D. (2015) Mining the coding and non-coding genome for cancer drivers. Cancer Lett.  369(2):307-15. doi: 10.1016/j.canlet.2015.09.015.

- Li J, Poursat MA, Drubay D, Motz A, Saci Z, Morillon A, Michiels S, Gautheret D. (2015) A Dual Model for Prioritizing Cancer Mutations in the Non-coding Genome Based on Germline and Somatic Events. PLoS Comput Biol, 11(11):e1004583. doi: 10.1371/journal.pcbi.1004583.

- Lopez V, Barinova N, Onishi M, Pobiega S, Pringle JR, Dubrana K, Marcand S. (2015) Cytokinesis breaks dicentric chromosomes preferentially at pericentromeric regions and telomere fusions. Genes Dev, 29(3):322-36. doi: 10.1101/gad.254664.114.

<- span class="doc_sdsv">Massouridès E, Polentes J, Mangeot P-E, Mournetas V, Nectoux J, Deburgrave N, Nusbaum P, Leturcq F, Popplewell L, Dickson G, Wein N, Flanigan K M, Peschanski M, Chelly J, Pinset C (2015) Dp412e: a novel human embryonic dystrophin isoform induced by BMP4 in early differentiated cells. Skeletal muscle, 14;5:40. doi: 10.1186/s13395-015-0062-6

- Marsolier-Kergoat MC, Palacio P, Berthonaud V, Maksud F, Stafford T, Bégouën R, Elalouf JM (2015) Hunting the Extinct Steppe Bison (Bison priscus) Mitochondrial Genome in the Trois-Frères Paleolithic Painted Cave. PLoS One, 10(6):e0128267. doi: 10.1371/journal.pone.0128267.

- Maury Y, Côme J, Piskorowski RA, Salah-Mohellibi N, Chevaleyre V, Peschanski M, Martinat S, Nedelec S (2015) Combinatorial analysis of developmental cues efficiently converts human pluripotent stem cells into multiple neuronal subtypes. Nature Biotechnology 33, 89–96. DOI: 10.1038/nbt.3049

- Nodin L, Noël O, Chaminade F, Maskri O, Barbier V, David O, Fossé P, Xie J. (2015) RNA SHAPE chemistry with aromatic acylating reagents. Bioorg Med Chem Lett, 25(3):566-70. doi: 10.1016/j.bmcl.2014.12.020.

- Noichri Y, Palais G, Ruby V, D'Autreaux B, Delaunay-Moisan A, Nyström T, Molin M, Toledano MB. (2015) In vivo parameters influencing 2-Cys Prx oligomerization: The role of enzyme sulfinylation. Redox Biol, 6:326-33. doi: 10.1016/j.redox.2015.08.011.

- Pierre-Jean M, Rigaill G, Neuvial P. (2015) Performance evaluation of DNA copy number segmentation methods. Brief Bioinform,16(4):600-15. doi: 10.1093/bib/bbu026. Epub 2014 Sep 8.

- Platel M, Goldar A, Wiggins JM, Barbosa P, Libeau P, Priam P, Narassimprakash H, Grodzenski X, Marheineke K. (2015) Tight Chk1 levels control replication cluster activation in Xenopus. PloS One 2015 Jun 5;10(6):e0129090. doi: 10.1371/journal.pone.0129090.

- Plaza Onate F, Batto JM, Juste C, Fadlallah J, Fougeroux C, Gouas D, Pons N, Kennedy S, Levenez F, Dore J, Ehrlich SD, Gorochov G, Larsen M. (2015) Quality control of microbiota metagenomics by k-mer analysis. BMC Genomics, 16:183. doi: 10.1186/s12864-015-1406-7.

- Poidatz D, Dos Santos E, Duval F, Moindjie H, Serazin V, Vialard F, De Mazancourt P, Dieudonné MN. (2015) Involvement of estrogen-related receptor-γ and mitochondrial content in intrauterine growth restriction and preeclampsia. Fertil Steril, 104(2):483-90. doi: 10.1016/j.fertnstert.2015.05.005.

- Roux AL, El Sayed F, Duffiet P, Bauer T, Heym B, Gaillard JL, Herrmann JL, Rottman M. (2015) Ruminococcus gnavus total hip arthroplasty infection in a 62-year-old man with ulcerative colitis. J Clin Microbio, 53(4):1428-30. doi: 10.1128/JCM.03040-14. Epub 2015 Jan 28.

- Saghaï A, Zivanovic Y, Zeyen N, Moreira D, Benzerara K, Deschamps P, Bertolino P, Ragon M, Tavera R, López-Archilla AI, López-García P. (2015) Metagenome-based diversity analyses suggest a significant contribution of non-cyanobacterial lineages to carbonate precipitation in modern microbialites. Front Microbiol, 6:797. doi: 10.3389/fmicb.2015.00797. eCollection 2015.

- Santos DB, Boussaid G, Stojkovic T, Orlikowski D, Letilly N, Behin A, Butel S, Lofaso F, Prigent H. (2015) Respiratory muscle dysfunction in facioscapulohumeral muscular dystrophy. Neuromuscul Disord, 25(8):632-9. doi: 10.1016/j.nmd.2015.04.011

- Sari-Hassoun M, Clement MJ, Hamdi I, Bollot G, Bauvais C, Joshi V, Toma F, Burgo A, Cailleret M, Rosales-Hernández MC, Macias Pérez ME, Chabane-Sari D, Curmi PA. (2015) Cucurbitacin I elicits the formation of actin/phospho-myosin II co-aggregates by stimulation of the RhoA/ROCK pathway and inhibition of LIM-kinase. Biochem Pharmaco,102:45-63. doi: 10.1016/j.bcp.2015.12.013. Epub 2015 Dec 18.

- Shekhar S, Kerleau M, Kühn S, Pernier J, Romet-Lemonne G, Jégou A, Carlier MF(2015) Formin and capping protein together embrace the actin filament in a ménage à trois. Nat Commun, 6:8730. doi: 10.1038/ncomms9730.

- Song Z., Clain J., Iorga B. I., Yi Z., Fisher N., Meunier B. (2015) Saccharomyces cerevisiae-Based Mutational Analysis of the bc1 Complex Qo Site Residue 279 To Study the Trade-Off between Atovaquone Resistance and Function. Antimicrobial agents and chemotherapy, 59 (7) 4053-4058.

- Song Z., Clain J., Iorga B. I., Vallières C., Lalève A., Fisher N., Meunier B. (2015) Interplay between the hinge region of iron sulphur protein and the Q o site in the bc 1 complex—Analysis of Plasmodium-like mutations in the yeast enzyme. BBA-Bioenergetics, 1847 (12) 1487–1494.

- Sorokina M, Medigue C, Vallenet D. (2016) A new network representation of the metabolism to detect chemical transformation modules. BMC Bioinformatics, 16:385. doi: 10.1186/s12859-015-0809-4.

- Theodorou I, Anilkumar P, Lelandais B, Clarisse D, Doerflinger A, Gravel E, Ducongé F, Doris E. (2015) Stable and compact zwitterionic polydiacetylene micelles with tumor-targeting properties. Chem Commun (Camb). 51(80):14937-40. doi: 10.1039/c5cc05333a.

- Tolonen AC, Cerisy T, El-Sayyed H, Boutard M, Salanoubat M, Church GM. (2015) Fungal lysis by a soil bacterium fermenting cellulose. Environ Microbiol, 17(8):2618-27. doi: 10.1111/1462-2920.12495. Epub 2014 May 25.

- Tudek,A., Candelli, T., Libri, D. (2015) Non-codingtranscription by RNA polymerase II in yeast: Hasard or nécessité? Biochimie, 117:28-36. doi: 10.1016/j.biochi.2015.04.020. Epub 2015 May 6. Review.

- Vallot C, Ouimette JF, Makhlouf M, Féraud O, Pontis J, Côme J, Martinat C, Bennaceur-Griscelli A, Lalande M, Rougeulle C. (2015) Erosion of X Chromosome Inactivation in Human Pluripotent Cells Initiates with XACT Coating and Depends on a Specific Heterochromatin Landscape. Cell Stem Cell, 16(5):533-46. doi: 10.1016/j.stem.2015.03.016.

- Vanhove A.S., Rubio T., Nguyen A.N., Lemire A., Roche D., Nicod J., Vergnes A., Poirier A.C., Disconzi E., Bachère E., Le Roux F., Jacq A., Charrière G.M. & Destoumieux-Garzón D. (2015) Copper homeostasis at the host vibrio interface: lessons from intracellular vibrio transcriptomics. Environ. Microbiol. doi: 10.1111/1462-2920.13078

- Villar E, ..., Vannier T, ..., Iudicone D. (2015) Ocean plankton. Environmental characteristics of Agulhas rings affect interocean plankton transport. Science, 348(6237):1261447. doi: 10.1126/science.1261447.

- Vinatier G., Corsi J.M., Mignotte B. and Gaumer S. (2015) Quantification of ataxin-3 and ataxin-7 aggregates formed in vivo reveals a threshold of aggregated polyglutamine proteins associated with cellular toxicity. Biochem. Biophys. Res. Commun. 464, 1060-1064.

- Wicker-Thomas C, Garrido D, Bontonou G, Napal L, Mazuras N, Denis B, Rubin T, Parvy JP, Montagne J (2015) Flexible Origin of Hydrocarbon/Pheromone Precursors in Drosophila melanogaster. Journal of lipid research

- Xu W, Domingues RG, Fonseca-Pereira D, Ferreira M, Ribeiro H, Lopez-Lastra S, Motomura Y, Moreira-Santos L, Bihl F, Braud V, Kee B, Brady H, Coles MC, Vosshenrich C, Kubo M, Di Santo JP, Veiga-Fernandes H. (2015) NFIL3 orchestrates the emergence of common helper innate lymphoid cell precursors. Cell Rep, 10(12):2043-54. doi: 10.1016/j.celrep.2015.02.057.

- Younes M, Robert C, Cottin F, Barrey E. (2015) Speed and Cardiac Recovery Variables Predict the Probability of Elimination in Equine Endurance Events. Plos One, 10(8):e0137013. doi: 10.1371/journal.pone.0137013.

- Zaag R, Tamby JP, Guichard C, Tariq Z, Rigaill G, Delannoy E, Renou JP, Balzergue S, Mary-Huard T, Aubourg S, Martin-Magniette ML, Brunaud V. (2015) GEM2Net: from gene expression modeling to -omics networks, a new CATdb module to investigate Arabidopsis thaliana genes involved in stress response. Nucleic Acids Res, 43(Database issue):D1010-7. doi: 10.1093/nar/gku1155

- Zhu S, Victoria GS, Marzo L, Ghosh R, Zurzolo C. (2015) Prion aggregates transfer through tunneling nanotubes in endocytic vesicles. Prion, 9(2):125-35. doi: 10.1080/19336896.2015.1025189.