L'école doctorale SDSV

Le doctorat

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Les doctorants sont fortement encouragés à envoyer leurs publications au secrétariat de l'ED, pour publication sur le site. Adressez-les nous dès qu'elles sont acceptées !

30/03/20

 

Les publications sont classées en ordre alphabétique de premier auteur. Le nom des doctorants SDSV est en gras.
Seules figurent les publications acceptées ou publiées.

 

- Ait-Saada A, Khorosjutina O, Chen J, Kramarz K, Maksimov V, Svensson JP, Lambert S, Ekwall K. (2019) Chromatin remodeler Fft3 plays a dual role at blocked DNA replication forks. Life Sci Alliance, 2(5). pii: e201900433. doi: 10.26508/lsa.201900433. Print 2019 Oct.

- Alejevski F, Saint-Charles A, Michard-Vanhée C, Martin B, Galant S, Vasiliauskas D, Rouyer F. (2019) The HisCl1 histamine receptor acts in photoreceptors to synchronize Drosophila behavioral rhythms with light-dark cycles. Nat Commun, 10(1):252. doi: 10.1038/s41467-018-08116-7.

- Altinoglu I., Merrifield C.J., Yamaichi Y. (2019) Single molecule super-resolution imaging of bacterial cell pole proteins with high-throughput quantitative analysis pipeline. Sci Rep. 9(1): 6680. doi: 10.1038/s41598-019-43051-7

- Ambroise C, Dehman A, Neuvial P, Rigaill G, Vialaneix N. (2019)Adjacency-constrained hierarchical clustering of a band similarity matrix with application to genomics. Algorithms Mol Biol, 14:22. doi: 10.1186/s13015-019-0157-4. eCollection 2019.

- Arbizzani F, Rincon SA, Paoletti A (2019) Increasing ergosterol levels delays formin-dependent assembly of F-actin cables and disrupts division plane positioning in fission yeast. J Cell Sci,132(13). pii: jcs227447. doi: 10.1242/jcs.227447.

- Arif M, Gauthier J, Sugier K, Iudicone D, Jaillon O, Wincker P, Peterlongo P, Madoui MA. (2019) Discovering millions of plankton genomic markers from the Atlantic Ocean and the Mediterranean Sea. Mol Ecol Resour, 19(2):526-535. doi: 10.1111/1755-0998.12985.

- Aubry C, Pernodet JL, Lautru S. (2019) A set of modular and integrative vectors for synthetic biology in Streptomyces. Appl Environ Microbiol,85(16). pii: e00485-19. doi: 10.1128/AEM.00485-19. Print 2019 Aug 15.

- Badel C, Erauso G, Gomez A, Catchpole R, Gonnet M, Oberto J, Forterre P, Da Cunha V. (2019) The global distribution and evolutionary history of the pT26-2 archaeal plasmid family. Environ Microbiol, 21(12):4685-4705. doi: 10.1111/1462-2920.14800. Epub 2019 Oct 21.

- Barbier L, Sáez PJ, Attia R, Lennon-Duménil AM, Lavi I, Piel M, Vargas P. (2019) Myosin II Activity Is Selectively Needed for Migration in Highly Confined Microenvironments in Mature Dendritic Cells. Front Immunol, 10:747. doi: 10.3389/fimmu.2019.00747. eCollection 2019.

- Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M, Döring V. (2019) Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations. Front Microbiol, 10:1313. doi: 10.3389/fmicb.2019.01313. eCollection 2019.

- Belilla J, Moreira D, Jardillier L, Reboul G, Benzerara K, López-García JM, Bertolino P, López-Archilla AI, López-García P. (2019) Hyperdiverse archaea near life limits at the polyextreme geothermal Dallol area. Nat Ecol Evol, 3(11):1552-1561. doi: 10.1038/s41559-019-1005-0. Epub 2019 Oct 28.

- Belot L, Albertini A, Gaudin Y. (2019) Structural and cellular biology of rhabdovirus entry. Adv Virus Res, ;104:147-183. doi: 10.1016/bs.aivir.2019.05.003. Epub 2019 Jun 21.

- Billaudeau C, Yao Z, Cornilleau C, Carballido-López R, Chastanet A. (2019) MreB Forms Subdiffraction Nanofilaments during Active Growth in Bacillus subtilis. mBio, 10(1). pii: e01879-18. doi: 10.1128/mBio.01879-18.

- Bodakuntla S, Jijumon AS, Villablanca C, Gonzalez-Billault C, Janke C. (2019) Microtubule-Associated Proteins: Structuring the Cytoskeleton. Trends Cell Biol,29(10):804-819. doi: 10.1016/j.tcb.2019.07.004. Epub 2019 Aug 12. Review.

- Bordelet H, Dubrana K. (2019) Keep moving and stay in a good shape to find your homologous recombination partner. Curr Genet, 65(1):29-39. doi: 10.1007/s00294-018-0873-1. Epub 2018 Aug 10. Review.

- Bouillier C, Rincheval V, Sitterlin D, Blouquit-Laye S, Desquesnes A, Eléouët JF, Gault E, Rameix-Welti MA (2019) Generation, Amplification, and Titration of Recombinant Respiratory Syncytial Viruses. J Vis Exp, (146). doi: 10.3791/59218.

- Bouillier C, Cosentino G, Léger T, Rincheval V, Richard CA, Desquesnes A, Sitterlin D, Blouquit-Laye S, Eléouët JF, Gault E, Rameix-Welti MA. (2019) The Interactome analysis of the Respiratory Syncytial Virus protein M2-1 suggests a new role in viral mRNA metabolism post-transcription. Sci Rep, 9(1):15258. doi: 10.1038/s41598-019-51746-0.

- Bourdon C, Bardou P, Aujean E, Le Guillou S, Tosser-Klopp G, Le Provost F. (2019) RumimiR: a detailed microRNA database focused on ruminant species. Database (Oxford), 2019. pii: baz099. doi: 10.1093/database/baz099.

- Broncy L, Paterlini-Bréchot P. (2019) Clinical Impact of Circulating Tumor Cells in Patients with Localized Prostate Cancer. Cells, 8(7). pii: E676. doi: 10.3390/cells8070676. Review.

- Carvalho C, L'Hôte V, Courbeyrette R, Kratassiouk G, Pinna G, Cintrat JC, Denby-Wilkes C, Derbois C, Olaso R, Deleuze JF, Mann C, Thuret JY. (2019) Glucocorticoids delay RAF-induced senescence promoted by EGR1. J Cell Sci, 132(16). pii: jcs230748. doi: 10.1242/jcs.230748.

- Casane D, Policarpo M, Laurenti P. (2019) Why the mutation rate never reaches zero? Med Sci (Paris), 35(3):245-251. doi: 10.1051/medsci/2019030. Epub 2019 Apr 1.

- Cerisy T, Rostain W, Chhun A, Boutard M, Salanoubat M, Tolonen AC. (2019) A Targetron-Recombinase System for Large-Scale Genome Engineering of Clostridia. mSphere, 4(6). pii: e00710-19. doi: 10.1128/mSphere.00710-19.

- Cerisy T, Iglesias A, Rostain W, Boutard M, Pelle C, Perret A, Salanoubat M, Fierobe HP, Tolonen AC. (2019) ABC Transporters Required for Hexose Uptake by Clostridium phytofermentans. J Bacteriol, 201(15). pii: e00241-19. doi: 10.1128/JB.00241-19. Print 2019 Aug 1.

- Chennoufi R, Cabrié A, Nguyen NH, Bogliotti N, Simon F, Cinquin B, Tauc P, Boucher JL, Slama-Schwok A, Xie J, Deprez E. (2019) Light-induced formation of NO in endothelial cells by photoactivatable NADPH analogues targeting nitric-oxide synthase. Biochim Biophys Acta Gen Subj, 1863(6):1127-1137. doi: 10.1016/j.bbagen.2019.04.004. Epub 2019 Apr 13.

- Chevallier ML, Della-Negra O, Chaussonnerie S, Barbance A, Muselet D, Lagarde F, Darii E, Ugarte E, Lescop E, Fonknechten N, Weissenbach J, Woignier T, Gallard JF, Vuilleumier S, Imfeld G, Le Paslier D, Saaidi PL. (2019) Natural Chlordecone Degradation Revealed by Numerous Transformation Products Characterized in Key French West Indies Environmental Compartments. Environ Sci Technol, 53(11):6133-6143. doi: 10.1021/acs.est.8b06305. Epub 2019 May 22.

- Cholé H, Carcaud J, Mazeau H, Famié S, Arnold G, Sandoz JC. (2019) Social Contact Acts as Appetitive Reinforcement and Supports Associative Learning in Honeybees. Curr Biol, 29(8):1407-1413.e3. doi: 10.1016/j.cub.2019.03.025. Epub 2019 Apr 11.

- Ciardo D, Goldar A, Marheineke K (2019) On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway. Genes, 10, 94. doi: 10.3390/genes10020094.

- Conceição EC, Refregier G, Gomes HM, Olessa-Daragon X, Coll F, Ratovonirina NH, Rasolofo-Razanamparany V, Lopes ML, van Soolingen D, Rutaihwa L, Gagneux S, Bollela VR, Suffys PN, Duarte RS, Lima KVB, Sola C. (2019) Mycobacterium tuberculosis lineage 1 genetic diversity in Pará, Brazil, suggests common ancestry with east-African isolates potentially linked to historical slave trade. Infect Genet Evol, 73:337-341. doi: 10.1016/j.meegid.2019.06.001. Epub 2019 Jun 3.

- Courret C, Gérard PR, Ogereau D, Falque M, Moreau L, Montchamp-Moreau C. (2019) X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression. Heredity (Edinb), 122(6):906-915. doi: 10.1038/s41437-018-0163-1. Epub 2018 Dec 5.

- Courret C, Chang CH, Wei KH, Montchamp-Moreau C, Larracuente AM. (2019) Meiotic drive mechanisms: lessons from Drosophila. Proc Biol Sci, 286(1913):20191430. doi: 10.1098/rspb.2019.1430. Epub 2019 Oct 23.

- Davì V, Chevalier L, Guo H, Tanimoto H, Barrett K, Couturier E, Boudaoud A, Minc N. (2019) Systematic mapping of cell wall mechanics in the regulation of cell morphogenesis. Proc Natl Acad Sci U S A, 116(28):13833-13838. doi: 10.1073/pnas.1820455116. Epub 2019 Jun 24.

- de Groot A, Siponen MI, Magerand R, Eugénie N, Martin-Arevalillo R, Doloy J, Lemaire D, Brandelet G, Parcy F, Dumas R, Roche P, Servant P, Confalonieri F, Arnoux P, Pignol D, Blanchard L. (2019) Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus. Nucleic Acids Res, 47(21):11403-11417. doi: 10.1093/nar/gkz883.

- Demarre G, Prudent V, Schenk H, Rousseau E, Bringer MA, Barnich N, Tran Van Nhieu G, Rimsky S, De Monte S, Espéli O. (2019) The Crohn's disease-associated Escherichia coli strain LF82 relies on SOS and stringent responses to survive, multiply and tolerate antibiotics within macrophages. PLoS Pathog, 15(11):e1008123. doi: 10.1371/journal.ppat.1008123. eCollection 2019 Nov.

- Denecker T, Durand W, Maupetit J, Hébert C, Camadro JM, Poulain P, Lelandais G. (2019) Pixel: a content management platform for quantitative omics data. PeerJ, 7:e6623. doi: 10.7717/peerj.6623. eCollection 2019.

- Deng Y, Luo X, Xie M, Bouloc P, Chen C, Jacq A. (2019) The ilvGMEDA operon is regulated by transcription attenuation in Vibrio alginolyticus ZJ-T. Appl Environ Microbiol, 85(19). pii: e00880-19. doi: 10.1128/AEM.00880-19. Print 2019 Oct 1.

- Devigne A, Meyer L, de la Tour CB, Eugénie N, Sommer S, Servant P. (2019) The absence of the RecN protein suppresses the cellular defects of Deinococcus radiodurans irradiated cells devoid of the PprA protein by limiting recombinational repair of DNA lesions. DNA Repair (Amst), 73:144-154. doi: 10.1016/j.dnarep.2018.11.011. Epub 2018 Nov 28.

- Donadieu J, Larabi IA, Tardieu M, Visser J, Hutter C, Sieni E, Kabbara N, Barkaoui M, Miron J, Chalard F, Milne P, Haroche J, Cohen F, Hélias-Rodzewicz Z, Simon N, Jehanne M, Kolenova A, Pagnier A, Aladjidi N, Schneider P, Plat G, Lutun A, Sonntagbauer A, Lehrnbecher T, Ferster A, Efremova V, Ahlmann M, Blanc L, Nicholson J, Lambilliote A, Boudiaf H, Lissat A, Svojgr K, Bernard F, Elitzur S, Golan M, Evseev D, Maschan M, Idbaih A, Slater O, Minkov M, Taly V, Collin M, Alvarez JC, Emile JF, Héritier S. (2019) Vemurafenib for Refractory Multisystem Langerhans Cell Histiocytosis in Children: An International Observational Study. J Clin Oncol, 37(31):2857-2865. doi: 10.1200/JCO.19.00456. Epub 2019 Sep 12.

- Dubois V, Pawlik A, Bories A, Le Moigne V, Sismeiro O, Legendre R, Varet H, Rodríguez-Ordóñez MDP, Gaillard JL, Coppée JY, Brosch R, Herrmann JL, Girard-Misguich F. (2019) Mycobacterium abscessus virulence traits unraveled by transcriptomic profiling in amoeba and macrophages. PLoS Pathog, 15(11):e1008069. doi: 10.1371/journal.ppat.1008069. eCollection 2019 Nov.

- Duciel L, Monraz Gomez LC, Kondratova M, Kuperstein I, Saule S. (2019) The Phosphatase PRL-3 Is Involved in Key Steps of Cancer Metastasis. J Mol Biol, 431(17):3056-3067. doi: 10.1016/j.jmb.2019.06.008. Epub 2019 Jun 14. Review.

- Duciel L, Anezo O, Mandal K, Laurent C, Planque N, Coquelle FM, Gentien D, Manneville JB, Saule S. (2019) Protein tyrosine phosphatase 4A3 (PTP4A3/PRL-3) promotes the aggressiveness of human uveal melanoma through dephosphorylation of CRMP2. Sci Rep, 9(1):2990. doi: 10.1038/s41598-019-39643-y.

- El Banna N, Hatem E, Heneman-Masurel A, Léger T, Baïlle D, Vernis L, Garcia C, Martineau S, Dupuy C, Vagner S, Camadro JM, Huang ME. (2019) Redox modifications of cysteine-containing proteins, cell cycle arrest and translation inhibition: Involvement in vitamin C-induced breast cancer cell death. Redox Biol, 2;26:101290. doi: 10.1016/j.redox.2019.101290.

- El Sayed F, Roux AL, Sapriel G, Salomon E, Bauer T, Gaillard JL, Rottman M. (2019) Molecular Typing of Multiple Isolates Is Essential to Diagnose Cutibacterium acnes Orthopedic Device-related Infection. Clin Infect Dis, 68(11):1942-1945. doi: 10.1093/cid/ciy952.

- Ermoza K, Glatigny S, Jah N, Camilo V, Mambu Mambueni H, Araujo LM, Chiocchia G, Breban M. (2019) Tolerogenic XCR1+ dendritic cell population is dysregulated in HLA-B27 transgenic rat model of spondyloarthritis. Arthritis Res Ther, 21(1):46. doi: 10.1186/s13075-019-1827-9

- Fabresse N, Aouad H, Knapp A, Mayer C, Etting I, Larabi IA, Alvarez JC. (2019) Development and validation of a liquid chromatography-tandem mass spectrometry method for simultaneous detection of 10 illicit drugs in oral fluid collected with FLOQSwabs™ and application to real samples. Drug Test Anal, 11(6):824-832. doi: 10.1002/dta.2563. Epub 2019 Jan 17.

- Fabresse N, Larabi IA, Stratton T, Mistrik R, Pfau G, Lorin de la Grandmaison G, Etting I, Grassin Delyle S, Alvarez JC. (2019) Development of a sensitive untargeted liquid chromatography-high resolution mass spectrometry screening devoted to hair analysis through a shared MS2 spectra database: A step toward early detection of new psychoactive substances. Drug Test Anal, 11(5):697-708. doi: 10.1002/dta.2535. Epub 2018 Nov 25.

- Fall F, Lenuzza N, Lamy E, Brollo M, Naline E, Devillier P, Thévenot E, Grassin-Delyle S. (2019) A split-range acquisition method for the non-targeted metabolomic profiling of human plasma with hydrophilic interaction chromatography - high-resolution mass spectrometry. J Chromatogr B Analyt Technol Biomed Life Sci, 1128:121780. doi: 10.1016/j.jchromb.2019.121780. Epub 2019 Aug 28.

- Faure G, Jézéquel K, Roisné-Hamelin F, Bitard-Feildel T, Lamiable A, Marcand S, Callebaut I. (2019) Discovery and Evolution of New Domains in Yeast Heterochromatin Factor Sir4 and Its Partner Esc1. Genome Biol Evol, 11(2):572-585. doi: 10.1093/gbe/evz010.

- Ferrari ML, Malardé V, Grassart A, Salavessa L, Nigro G, Descorps-Declere S, Rohde JR, Schnupf P, Masson V, Arras G, Loew D, Sansonetti PJ, Sauvonnet N. (2019) Shigella promotes major alteration of gut epithelial physiology and tissue invasion by shutting off host intracellular transport. Proc Natl Acad Sci U S A, 116(27):13582-13591. doi: 10.1073/pnas.1902922116. Epub 2019 Jun 17.

- Fogel O, Bugge Tinggaard A, Fagny M, Sigrist N, Roche E, Leclere L, Deleuze JF, Batteux F, Dougados M, Miceli-Richard C, Tost J. (2019) Deregulation of microRNA expression in monocytes and CD4+ T lymphocytes from patients with axial spondyloarthritis. Arthritis Res Ther, 21 (1) 51. doi: 10.1186/s13075-019-1829-7.

- Freneau A, Dos Santos M, Voisin P, Tang N, Bueno Vizcarra M, Villagrasa C, Roy L, Vaurijoux A, Gruel G. (2019) Relation between DNA double-strand breaks and energy spectra of secondary electrons produced by different X-ray energies. Int J Radiat Biol, 94(12):1075-1084. doi: 10.1080/09553002.2018.1518612. Epub 2018 Sep 26.

- Furci L, Jain R, Stassen J, Berkowitz O, Whelan J, Roquis D, Baillet V, Colot V, Johannes F, Ton J. (2019) Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis. Elife, 8. pii: e40655. doi: 10.7554/eLife.40655. [Epub ahead of print]

- Funk J, Merino F, Venkova L, Heydenreich L, Kierfeld J, Vargas P, Raunser S, Piel M, Bieling P. (2019) Profilin and formin constitute a pacemaker system for robust actin filament growth. Elife, 8. pii: e50963. doi: 10.7554/eLife.50963.

- Galindo LJ, Torruella G, Moreira D, Eglit Y, Simpson AGB, Völcker E, Clauß S, López-García P. (2019) Combined cultivation and single-cell approaches to the phylogenomics of nucleariid amoebae, close relatives of fungi. Philos Trans R Soc Lond B Biol Sci, 374(1786):20190094. doi: 10.1098/rstb.2019.0094. Epub 2019 Oct 7.

- Galli E, Ferat JL, Desfontaines JM, Val ME, Skovgaard O, Barre FX, Possoz C. (2019) Replication termination without a replication fork trap. Sci Rep, 9(1):8315. doi: 10.1038/s41598-019-43795-2.

- Garcia-Arcos JM, Chabrier R, Deygas M, Nader G, Barbier L, Sáez PJ, Mathur A, Vargas P, Piel M. (2019) Reconstitution of cell migration at a glance. J Cell Sci,132(4). pii: jcs225565. doi: 10.1242/jcs.225565. Review.

- Gatin L, Mghir AS, Mouton W, Laurent F, Ghout I, Rioux-Leclercq N, Tattevin P, Verdier MC, Cremieux AC. (2019) Colistin-containing cement spacer for treatment of experimental carbapenemase-producing Klebsiella pneumoniae prosthetic joint infection. Int J Antimicrob Agents, 54(4):456-462. doi: 10.1016/j.ijantimicag.2019.07.009. Epub 2019 Jul 15

- Georges A, Gopaul D, Denby Wilkes C, Giordanengo Aiach N, Novikova E, Barrault MB, Alibert O, Soutourina J. (2019) Functional interplay between Mediator and RNA polymerase II in Rad2/XPG loading to the chromatin. Nucleic Acids Res, 47(17):8988-9004. doi: 10.1093/nar/gkz598.

- Gervason S, Larkem D, Mansour AB, Botzanowski T, Müller CS, Pecqueur L, Le Pavec G, Delaunay-Moisan A, Brun O, Agramunt J, Grandas A, Fontecave M, Schünemann V, Cianférani S, Sizun C, Tolédano MB, D'Autréaux B. (2019) Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide-processing functions of ferredoxin-2 and frataxin. Nat Commun, 10(1):3566. doi: 10.1038/s41467-019-11470-9.

- Ghieh F, Mitchell V, Mandon-Pepin B, Vialard F. (2019) Genetic defects in human azoospermia. Basic Clin Andro, 29:4. doi: 10.1186/s12610-019-0086-6. eCollection 2019.

- Giordano T, Gadadhar S, Bodakuntla S, Straub J, Leboucher S, Martinez G, Chemlali W, Bosc C, Andrieux A, Bieche I, Arnoult C, Geimer S, Janke C. (2019) Loss of the deglutamylase CCP5 perturbs multiple steps of spermatogenesis and leads to male infertility. J Cell Sci, 132(3). pii: jcs226951. doi: 10.1242/jcs.226951.

- Givelet M, Lapoujade C, Fouchet P. (2019) Competition for Food Drives Stem Cell Fate in Facultative Niches. Cell Stem Cell, 24(1):1-2. doi: 10.1016/j.stem.2018.12.010.

- Goussault H, Salvator H, Catherinot E, Chabi ML, Tcherakian C, Chabrol A, Didier M, Rivaud E, Fischer A, Suarez F, Hermine O, Lanternier F, Lortholary O, Mahlaoui N, Devillier P, Couderc LJ. (2019) Primary immunodeficiency-related bronchiectasis in adults: comparison with bronchiectasis of other etiologies in a French reference center. Respir Res, 20(1):275. doi: 10.1186/s12931-019-1242-4.

- Graindorge A, Pinheiro I, Nawrocka A, Mallory AC, Tsvetkov P, Gil N, Carolis C, Buchholz F, Ulitsky I, Heard E, Taipale M, Shkumatava A. (2019) In-cell identification and measurement of RNA-protein interactions. Nat Commun, 10(1):5317. doi: 10.1038/s41467-019-13235-w

- Grandon B, Rincheval-Arnold A, Jah N, Corsi JM, Araujo LM, Glatigny S, Prevost E, Roche D, Chiocchia G, Guénal I, Gaumer S, Breban M (2019) HLA-B27 alters BMP/TGFβ signalling in Drosophila, revealing putative pathogenic mechanism for spondyloarthritis. Ann Rheum Dis, 75(1):131-144.e3. doi: 10.1016/j.molcel.2019.05.021. Epub 2019 Jun 13.

- Grassin-Delyle S, Salvator H, Mantov N, Abrial C, Brollo M, Faisy C, Naline E, Couderc LJ, Devillier P. (2019) Bitter Taste Receptors (TAS2Rs) in Human Lung Macrophages: Receptor Expression and Inhibitory Effects of TAS2R Agonists. Front Physio, 10:1267. doi: 10.3389/fphys.2019.01267. eCollection 2019.

- Grassin-Delyle S, Martin M, Hamzaoui O, Lamy E, Jayle C, Sage E, Etting I, Devillier P, Alvarez JC. (2019) A high-resolution ICP-MS method for the determination of 38 inorganic elements in human whole blood, urine, hair and tissues after microwave digestion. Talanta, 199:228-237. doi: 10.1016/j.talanta.2019.02.068. Epub 2019 Feb 20.

- Guérin TM, Béneud C, Barinova N, Barinova N, López V, Lazar-Stefanita L, Deshayes A, Thierry A, Koszul R, Dubrana K and Marcand S (2019) Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis. Mol Cell, 75(1):131-144.e3. doi: 10.1016/j.molcel.2019.05.021. Epub 2019 Jun 13.

- Hardy J, Dai D, Ait Saada A,Teixeira-Silva A, Dupoiron L, Mojallali F, Fréon K,Ochsenbein F, Hartmann B, Lambert S. (2019) Histone deposition promotes recombination-dependent replication at arrested forks. PLoS Gene, 15(10):e1008441. doi: 10.1371/journal.pgen.1008441. eCollection 2019 Oct.

- Hartley S, Simon N, Larabi A, Vaugier I, Barbot F, Quera-Salva MA, Alvarez JC. (2019) Effect of Smoked Cannabis on Vigilance and Accident Risk Using Simulated Driving in Occasional and Chronic Users and the Pharmacokinetic-Pharmacodynamic Relationship. Clin Chem, 65(5):684-693. doi: 10.1373/clinchem.2018.299727. Epub 2019 Mar 14.

- Hatem E, Azzi S, El Banna N, He T, Heneman-Masurel A, Vernis L, Baïlle D, Masson V, Dingli F, Loew D, Azzarone B, Eid P, Baldacci G, Huang ME. (2019) Auranofin/Vitamin C: A Novel Drug Combination Targeting Triple-Negative Breast Cancer. J Natl Cancer Inst, 111(6):597-608. doi: 10.1093/jnci/djy149.

- Helleu Q, Courret C, Ogereau D, Burnham KL, Chaminade N, Chakir M, Aulard S, Montchamp-Moreau C. (2019) Sex-Ratio Meiotic Drive Shapes the Evolution of the Y Chromosome in Drosophila simulans. Mol Biol Evol, 36(12):2668-2681. doi: 10.1093/molbev/msz160.

- Henriques SF, Gicquel E, Marsolier J, Richard I. (2019) Functional and cellular localization diversity associated with Fukutin-related protein patient genetic variants. Hum Mutat, 40(10):1874-1885. doi: 10.1002/humu.23827. Epub 2019 Jul 3.

- Hoch L, Henriques SF, Bruge C, Marsolier J, Benabides M, Bourg N, Tournois J, Mahé G, Morizur L, Jarrige M, Bigot A, Richard I, Nissan X. (2019) Identification of thiostrepton as a pharmacological approach to rescue misfolded alpha-sarcoglycan mutant proteins from degradation. Sci Rep, 9(1):6915. doi: 10.1038/s41598-019-43399-w.

- Jacqueline S, Charlier P. (2019) Forensic analysis in tribal art and scientific integrity. Med Sci (Paris), 35(10):793-796. doi: 10.1051/medsci/2019152. Epub 2019 Oct 18. French.

- Jenzer C, Simionato E, Largeau C, Scarcelli V, Lefebvre C, Legouis R. (2019) Autophagy mediates phosphatidylserine exposure and phagosome degradation during apoptosis through specific functions of GABARAP/LGG-1 and LC3/LGG-2. Autophagy, 15(2):228-241. doi: 10.1080/15548627.2018.1512452.

- Kammerscheit X, Chauvat F, Cassier-Chauvat C. (2019) First in vivo Evidence That Glutathione-S-Transferase Operates in Photo-Oxidative Stress in Cyanobacteria. Front Microbiol, 10:1899. doi: 10.3389/fmicb.2019.01899. eCollection 2019.

- Kammerscheit X, Chauvat F, Cassier-Chauvat C. (2019) From Cyanobacteria to Human, MAPEG-Type Glutathione-S-Transferases Operate in Cell Tolerance to Heat, Cold, and Lipid Peroxidation. Front Microbiol,10:2248. doi: 10.3389/fmicb.2019.02248. eCollection 2019.

- Klotoe BJ, Kacimi S, Costa-Conceicão E, Gomes HM, Barcellos RB, Panaiotov S, Haj Slimene D, Sikhayeva N, Sengstake S, Schuitema AR, Akhalaia M, Alenova A, Zholdybayeva E, Tarlykov P, Anthony R, Refrégier G, Sola C. (2019) Genomic characterization of MDR/XDR-TB in Kazakhstan by a combination of high-throughput methods predominantly shows the ongoing transmission of L2/Beijing 94-32 central Asian/Russian clusters. BMC Infect Dis, 19(1):553. doi: 10.1186/s12879-019-4201-2.

- Koch M, Pandi A, Borkowski O, Cardoso Batista A, Faulon JL. (2019) Custom-made transcriptional biosensors for metabolic engineering. Curr Opin Biotechno, 59:78-84. doi: 10.1016/j.copbio.2019.02.016. Review.

- Kretov DA, Mordovkina DA, Eliseeva IA, Lyabin DN, Polyakov DN, Joshi V, Desforges B, Hamon L, Lavrik OI, Pastré D, Curmi PA, Ovchinnikov LP. (2019) Inhibition of Transcription Induces Phosphorylation of YB-1 at Ser102 and Its Accumulation in the Nucleus. Cells, 9(1). pii: E104. doi: 10.3390/cells9010104.

- Kretov DA, Clément MJ, Lambert G, Durand D, Lyabin DN, Bollot G, Bauvais C, Samsonova A, Budkina K, Maroun RC, Hamon L, Bouhss A, Lescop E, Toma F, Curmi PA, Maucuer A, Ovchinnikov LP, Pastré D. (2019) YB-1, an abundant core mRNA-binding protein, has the capacity to form an RNA nucleoprotein filament: a structural analysis. Nucleic Acids Res, 47(6):3127-3141. doi: 10.1093/nar/gky1303.

- Krüger LK, Sanchez JL, Paoletti A, Tran PT. (2019) Kinesin-6 regulates cell-size-dependent spindle elongation velocity to keep mitosis duration constant in fission yeast. Elife, 8. pii: e42182. doi: 10.7554/eLife.42182.

- Kubik S, Bruzzone MJ, Challal D, Dreos R, Mattarocci S, Bucher P, Libri D, Shore D. (2019) Opposing chromatin remodelers control transcription initiation frequency and start site selection. Nat Struct Mol Bio, 26(8):744-754. doi: 10.1038/s41594-019-0273-3. Epub 2019 Aug 5.

- Lama Z, Gaudin Y, Blondel D, Lagaudrière-Gesbert C. (2019) Kinase inhibitors tyrphostin 9 and rottlerin block early steps of rabies virus cycle. Antiviral Res, 168:51-60. doi: 10.1016/j.antiviral.2019.04.014. Epub 2019 May 7

- Latino L, Midoux C, Vergnaud G, Pourcel C. (2019) Investigation of Pseudomonas aeruginosa strain PcyII-10 variants resisting infection by N4-like phage Ab09 in search for genes involved in phage adsorption. PLoS One, 14(4):e0215456. doi: 10.1371/journal.pone.0215456. eCollection 2019.

- Lee BH, Garmyn D, Gal L, Guérin C, Guillier L, Rico A, Rotter B, Nicolas P, Piveteau P. (2019) Exploring Listeria monocytogenes Transcriptomes in Correlation with Divergence of Lineages and Virulence as Measured in Galleria mellonella. Appl Environ Microbiol, 85(21). pii: e01370-19. doi: 10.1128/AEM.01370-19. Print 2019 Nov 1.

- Lelandais G, Denecker T, Garcia C, Danila N, Léger T, Camadro JM. (2019) Label-free quantitative proteomics in Candida yeast species: technical and biological replicates to assess data reproducibility. BMC Res Notes, 12(1):470. doi: 10.1186/s13104-019-4505-8.

- Lévy E, El Banna N, Baïlle D, Heneman-Masurel A, Truchet S, Rezaei H, Huang ME, Béringue V, Martin D, Vernis L. (2019) Causative Links between Protein Aggregation and Oxidative Stress: A Review. Int J Mol Sci, 20(16). pii: E3896. doi: 10.3390/ijms20163896. Review.

- Le Moigne V, Bernut A, Cortès M, Viljoen A, Dupont C, Pawlik A, Gaillard JL, Misguich F, Crémazy F, Kremer L, Herrmann JL. (2019) Lsr2 Is an Important Determinant of Intracellular Growth and Virulence in Mycobacterium abscessus. Front Microbiol, 10:905. doi: 10.3389/fmicb.2019.00905. eCollection 2019.

- Liégard B, Baillet V, Etcheverry M, Joseph E, Lariagon C, Lemoine J, Evrard A, Colot V, Gravot A, Manzanares-Dauleux MJ, Jubault M. (2019) Quantitative resistance to clubroot infection mediated by transgenerational epigenetic variation in Arabidopsis. New Phytol, 222(1):468-479. doi: 10.1111/nph.15579. Epub 2018 Nov 30.

- Lo Scrudato M, Poulard K, Sourd C, Tomé S, Klein AF, Corre G, Huguet A, Furling D, Gourdon G, Buj-Bello A. (2019) Genome Editing of Expanded CTG Repeats within the Human DMPK Gene Reduces Nuclear RNA Foci in the Muscle of DM1 Mice. Mol Ther, 27(8):1372-1388. doi: 10.1016/j.ymthe.2019.05.021. Epub 2019 Jun 5.

- Macia E, Partisani M, Wang H, Lacas-Gervais S, Le Clainche C, Luton F, Franco M. (2019) The C-terminal domain of EFA6A interacts directly with F-actin and assembles F-actin bundles. Sci Rep, 9(1):19209. doi: 10.1038/s41598-019-55630-9.

- Maikova A, Kreis V, Boutserin A, Severinov K, Soutourina O. (2019) Using an Endogenous CRISPR-Cas System for Genome Editing in the Human Pathogen Clostridium difficile. Appl Environ Microbiol, 85(20). pii: e01416-19. doi: 10.1128/AEM.01416-19. Print 2019 Oct 15

- Maroc L, Fairhead C.(2019) A new inducible CRISPR-Cas9 system useful for genome editing and study of double-strand break repair in Candida glabrata. Yeast, 36(12):723-731. doi: 10.1002/yea.3440. Epub 2019 Sep 5.

- Médigue C, Calteau A, Cruveiller S, Gachet M, Gautreau G, Josso A, Lajus A, Langlois J, Pereira H, Planel R, Roche D, Rollin J, Rouy Z, Vallenet D. (2019) MicroScope-an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. Brief Bioinform, 20(4):1071-1084. doi: 10.1093/bib/bbx113.

- Midonet C, Miele S, Paly E, Guerois R, Barre FX. (2019) The TLCΦ satellite phage harbors a Xer recombination activation factor. Proc Natl Acad Sci U S A, 116(37):18391-18396. doi: 10.1073/pnas.1902905116. Epub 2019 Aug 16.

- Molinie N, Rubtsova SN, Fokin A, Visweshwaran SP, Rocques N, Polesskaya A, Schnitzler A, Vacher S, Denisov EV, Tashireva LA, Perelmuter VM, Cherdyntseva NV, Bièche I, Gautreau AM. (2019) Cortical branched actin determines cell cycle progression. Cell Res, 29(6):432-445. doi: 10.1038/s41422-019-0160-9. Epub 2019 Apr 10.

- Mounkoro P, Michel T, Blandin S, Golinelli M-P, Davioud-Charvet E, Meunier B (2019) Investigating the mode of action of the redox-active antimalarial drug plasmodione using the yeast model. Free Rad Biol Med,141:269-278. DOI:  10.1016/j.freeradbiomed.2019.06.026 

- Mounkoro P, Michel T, Benhachemi R, Surpateanu G, Iorga BI, Fisher N, Meunier B. (2019) Mitochondrial complex III Qi -site inhibitor resistance mutations found in laboratory selected mutants and field isolates. Pest Manag Sci, 75(8):2107-2114. doi: 10.1002/ps.5264. Epub 2018 Dec 24.

- Najah S, Saulnier C, Pernodet JL, Bury-Moné S. (2019) Design of a generic CRISPR-Cas9 approach using the same sgRNA to perform gene editing at distinct loci. BMC Biotechnol, 19(1):18. doi: 10.1186/s12896-019-0509-7.

- Neri T, Hiriart E, van Vliet PP, Faure E, Norris RA, Farhat B, Jagla B, Lefrancois J, Sugi Y, Moore-Morris T, Zaffran S, Faustino RS, Zambon AC, Desvignes JP, Salgado D, Levine RA, de la Pompa JL, Terzic A, Evans SM, Markwald R, Pucéat M. (2019) Human pre-valvular endocardial cells derived from pluripotent stem cells recapitulate cardiac pathophysiological valvulogenesis. Nat Commu, 10(1):1929. doi: 10.1038/s41467-019-09459-5

- Nogues P, Dos Santos E, Jammes H, Berveiller P, Arnould L, Vialard F, Dieudonné MN. (2019) Maternal obesity influences expression and DNA methylation of the adiponectin and leptin systems in human third-trimester placenta.  Clin Epigenetics, 11(1):20. doi: 10.1186/s13148-019-0612-6.

- Noussair L, Salomon E, El Sayed F, Duran C, Bouchand F, Roux AL, Gaillard JL, Bauer T, Rottman M, Dinh A. (2019) Monomicrobial bone and joint infection due to Corynebacterium striatum: literature review and amoxicillin-rifampin combination as treatment perspective. Eur J Clin Microbiol Infect Dis, (7):1269-1278. doi: 10.1007/s10096-019-03542-x. Epub 2019 Mar 22.

- Osman JR, Regeard C, Badel C, Fernandes G, DuBow MS. (2019) Variation of bacterial biodiversity from saline soils and estuary sediments present near the Mediterranean Sea coast of Camargue (France). Antonie Van Leeuwenhoek, 112(3):351-365. doi: 10.1007/s10482-018-1164-z. Epub 2018 Sep 19.

- Pandi A, Grigoras I, Borkowski O, Faulon JL. (2019) Optimizing Cell-Free Biosensors to Monitor Enzymatic Production. ACS Synth Bio, 8(8):1952-1957. doi: 10.1021/acssynbio.9b00160. Epub 2019 Aug 2.

- Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M, Faulon JL (2019) Metabolic perceptrons for neural computing in biological systems. Nat Commun, 10(1):3880. doi: 10.1038/s41467-019-11889-0.

- Perochon J, Grandon B, Roche D, Wintz C, Demay Y, Mignotte B, Szuplewski S* and Gaumer S* (2019) The endoplasmic reticulum unfolded protein response varies depending on the affected region of the tissue but independently from the source of stress. Cell Stress Chaperones, 24, 817-824. doi:10.1007/s12192-019-01009-8

- Petrizzelli M., de Vienne D. and Dillmann C. (2019) Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. Genetics, 211 (2) 741-75.

- Ponce-Toledo RI, López-García P, Moreira D. (2019) Horizontal and endosymbiotic gene transfer in early plastid evolution. New Phytol, 224(2):618-624. doi: 10.1111/nph.15965. Epub 2019 Jul 4. Review.

- Quadrana L, Etcheverry M, Gilly A, Caillieux E, Madoui MA, Guy J, Bortolini Silveira A, Engelen S, Baillet V, Wincker P, Aury JM, Colot V. (2019) Transposition favors the generation of large effect mutations that may facilitate rapid adaption. Nat Commun, 10(1):3421. doi: 10.1038/s41467-019-11385-5.

- Platel M, Narassimprakash H, Ciardo D, Haccard O, Marheineke K. (2019) Genome wide decrease of DNA replication eye density at the midblastula transition of Xenopus laevis. Cell Cycle, 18(13):1458-1472. doi: 10.1080/15384101.2019.1618641. Epub 2019 May 26.

- Plaza Oñate F, Le Chatelier E, Almeida M, Cervino ACL, Gauthier F, Magoulès F, Ehrlich SD, Pichaud M. (2019) MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data. Bioinformatic, 35(9):1544-1552. doi: 10.1093/bioinformatics/bty830

- Reboul G, Moreira D, Bertolino P, Hillebrand-Voiculescu AM, López-García P. (2019) Microbial eukaryotes in the suboxic chemosynthetic ecosystem of Movile Cave, Romania. Environ Microbiol Rep, 11(3):464-473. doi: 10.1111/1758-2229.12756. Epub 2019 Apr 26.

- Retureau R, Oguey C, Mauffret O, Hartmann B. (2019) Structural Explorations of NCp7-Nucleic Acid Complexes Give Keys to Decipher the Binding Process. J Mol Bio, 431 (10) 1966-1980. doi: 10.1016/j.jmb.2019.03.002. Epub 2019 Mar 12.

- Rochat T, Pérez-Pascual D, Nilsen H, Carpentier M, Bridel S, Bernardet JF, Duchaud E. (2019) Identification of a Novel Elastin-Degrading Enzyme from the Fish Pathogen Flavobacterium psychrophilum. Appl Environ Microbiol, 85(6). pii: e02535-18. doi: 10.1128/AEM.02535-18. Print 2019 Mar 15.

- Rubio T, Oyanedel D, Labreuche Y, Toulza E, Luo X, Bruto M, Chaparro C, Torres M, de Lorgeril J, Haffner P, Vidal-Dupiol J, Lagorce A, Petton B, Mitta G, Jacq A, Le Roux F, Charrière GM, Destoumieux-Garzón D. (2019) Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome of Vibrio infections. Proc Natl Acad Sci U S A, 116(28):14238-14247. doi: 10.1073/pnas.1905747116. Epub 2019 Jun 20.

- Sartori-Rupp A, Cordero Cervantes D, Pepe A, Gousset K, Delage E, Corroyer-Dulmont S, Schmitt C, Krijnse-Locker J, Zurzolo C (2019). Correlative cryo-electron microscopy reveals the structure of TNTs in neuronal cells. Nat Commun, 10(1):342. doi: 10.1038/s41467-018-08178-7.

- Seffouh I, Przybylski C, Seffouh A, El Masri R, Vivès RR, Gonnet F, Daniel R. (2019) Mass spectrometry analysis of the human endosulfatase Hsulf-2. Biochem Biophys Rep, 18:100617. doi: 10.1016/j.bbrep.2019.01.010. eCollection 2019 Jul.

- Sena E, Rocques N, Borday C, Muhamad Amin HS, Parain K, Sitbon D, Chesneau A, Durand BC. (2019) Barhl2 maintains T cell factors as repressors and thereby switches off the Wnt/β-Catenin response driving Spemann organizer formation. Development, 146(10). pii: dev173112. doi: 10.1242/dev.173112.

- Singatulina AS, Hamon L, Sukhanova MV, Desforges B, Joshi V, Bouhss A, Lavrik OI, Pastré D. (2019) PARP-1 Activation Directs FUS to DNA Damage Sites to Form PARG-Reversible Compartments Enriched in Damaged DNA. Cell Res, 27(6):1809-1821.e5. doi: 10.1016/j.celrep.2019.04.031.

- Souphron J, Bodakuntla S, Jijumon AS, Lakisic G, Gautreau AM, Janke C, Magiera MM. (2019) Purification of tubulin with controlled post-translational modifications by polymerization-depolymerization cycles. Nat Protoc, 14(5):1634-1660. doi: 10.1038/s41596-019-0153-7. Epub 2019 Apr 17.

- Tari M, Manceau V, de Matha Salone J, Kobayashi A, Pastré D, Maucuer A. (2019) U2AF65 assemblies drive sequence-specific splice site recognition. EMBO Rep, 20(8):e47604. doi: 10.15252/embr.201847604. Epub 2019 Jul 4.

- Thomas M, Stuani L, Darii E, Lechaplais C, Pateau E, Tabet JC, Salanoubat M, Saaidi PL, Perret A. (2019) De novo structure determination of 3-((3-aminopropyl)amino)-4-hydroxybenzoic acid, a novel and abundant metabolite in Acinetobacter baylyi ADP1. Metabolomics, 15(3):45. doi: 10.1007/s11306-019-1508-3.

- Tidjani AR, Lorenzi JN, Toussaint M, van Dijk E, Naquin D, Lespinet O, Bontemps C, Leblond P. (2019) Genome Sequences of 11 Conspecific Streptomyces sp. Strains. Microbiol Resour Announc, 8(38). pii: e00863-19. doi: 10.1128/MRA.00863-19.

- Tidjani AR, Lorenzi JN, Toussaint M, van Dijk E, Naquin D, Lespinet O, Bontemps C, Leblond P. (2019) Massive Gene Flux Drives Genome Diversity between Sympatric Streptomyces Conspecifics. mBio, 10(5). pii: e01533-19. doi: 10.1128/mBio.01533-19.

- Tiotiu A, Salvator H, Jaussaud R, Jankowski R, Couderc LJ, Catherinot E, Devillier P. (2019) Efficacy of immunoglobulin replacement therapy and azithromycin in severe asthma with antibody deficiency. Allergol Int, pii: S1323-8930(19)30175-3. doi: 10.1016/j.alit.2019.10.011. [Epub ahead of print]

- Vallenet D, Calteau A, Dubois M, Amours P, Bazin A, Beuvin M, Burlot L, Bussell X, Fouteau S, Gautreau G, Lajus A, Langlois J, Planel R, Roche D, Rollin J, Rouy Z, Sabatet V, Médigue C. (2019) MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. Nucleic Acids Res, 48(D1):D579-D589. doi: 10.1093/nar/gkz926.

- Veaudor T, Cassier-Chauvat C, Chauvat F. (2019) .Genomics of Urea Transport and Catabolism in Cyanobacteria: Biotechnological Implications. Front Microbiol, 10:2052. doi: 10.3389/fmicb.2019.02052. eCollection 2019. Review.

- Veyssière M, Perea J, Michou L, Boland A, Caloustian C, Olaso R, Deleuze J-F, Cornelis F, Petit-Teiseira E, Chaudru, V (2019) A novel nonsense variant in SUPT20H gene associated with Rheumatoid Arthritis identified by Whole Exome Sequencing of multiplex families. PLoS ONE 14(3): e0213387. https://doi.org/10.1371/journal.pone.0213387

- Voyvodic PL, Pandi A, Koch M, Conejero I, Valjent E, Courtet P, Renard E, Faulon JL, Bonnet J. (2019) Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors. Nat Commun, 10(1):1697. doi: 10.1038/s41467-019-09722-9.

- Witwinowski J, Moutiez M, Coupet M, Correia I, Belin P, Ruzzini A, Saulnier C, Caraty L, Favry E, Seguin J, Lautru S, Lequin O, Gondry M, Pernodet JL, Darbon E. (2019) Study of bicyclomycin biosynthesis in Streptomyces cinnamoneus by genetic and biochemical approaches. Sci Rep, 9(1):20226. doi: 10.1038/s41598-019-56747-7.

- Wang S, Han Z, Libri D, Porrua O, Strick TR. (2019) Single-molecule characterization of extrinsic transcription termination by Sen1 helicase. Nat Commun, 10(1):1545. doi: 10.1038/s41467-019-09560-9.

- Yanagawa A, Couto A, Sandoz JC, Hata T, Mitra A, Ali Agha M, Marion-Poll F. (2019) LPS perception through taste-induced reflex in Drosophila melanogaster. J Insect Physio, 112:39-47. doi: 10.1016/j.jinsphys.2018.12.001. Epub 2018 Dec 7.

- Zahoor MK, Poidevin M, Lecerf C, Garrido D, Montagne J. (2019) A Drosophila genetic screen for suppressors of S6kinase-dependent growth identifies the F-box subunit Archipelago/FBXW7. Mol Genet Genomics, 294(3):573-582. doi: 10.1007/s00438-018-01529-5. Epub 2019 Jan 17.

- Żylicz JJ, Bousard A, Žumer K, Dossin F, Mohammad E, da Rocha ST, Schwalb B, Syx L, Dingli F, Loew D, Cramer P, Heard E. (2019) The Implication of Early Chromatin Changes in X Chromosome Inactivation. Cell, 176(1-2):182-197.e23. doi: 10.1016/j.cell.2018.11.041. Epub 2018 Dec 27.