L'école doctorale SDSV

Le doctorat


Direction de thèse

Liens utiles

Les doctorants sont fortement encouragés à envoyer leurs publications au secrétariat de l'ED, pour publication sur le site. Adressez-les nous dès qu'elles sont acceptées !



Les publications sont classées en ordre alphabétique de premier auteur. Le nom des doctorants SDSV est en gras.
Seules figurent les publications acceptées ou publiées.


- Altinoglu I., Merrifield C.J., Yamaichi Y. (2019) Single molecule super-resolution imaging of bacterial cell pole proteins with high-throughput quantitative analysis pipeline. Sci Rep. 9(1): 6680. doi: 10.1038/s41598-019-43051-7

- Arbizzani F, Rincon SA, Paoletti A (2019) Increasing ergosterol levels delays formin-dependent assembly of F-actin cables and disrupts division plane positioning in fission yeast. J Cell Sci,132(13). pii: jcs227447. doi: 10.1242/jcs.227447.

- Aubry C, Pernodet JL, Lautru S. (2019) A set of modular and integrative vectors for synthetic biology in Streptomyces. Appl Environ Microbiol, pii: AEM.00485-19. doi: 10.1128/AEM.00485-19. [Epub ahead of print]

- Badel C, Da Cunha V, Catchpole R, Forterre P, Oberto J. (2019) WASPS: Web-Assisted Symbolic Plasmid Synteny Server. Bioinformatics, pii: btz745. doi: 10.1093/bioinformatics/btz745. [Epub ahead of print]

- Badel C, Erauso G, Gomez A, Catchpole R, Gonnet M, Oberto J, Forterre P, Da Cunha V. (2019) The global distribution and evolutionary history of the pT26-2 archaeal plasmid family.Environ Microbiol, doi: 10.1111/1462-2920.14800. [Epub ahead of print]

- Belkhelfa S, Roche D, Dubois I, Berger A, Delmas VA, Cattolico L, Perret A, Labadie K, Perdereau AC, Darii E, Pateau E, de Berardinis V, Salanoubat M, Bouzon M, Döring V. (2019) Continuous Culture Adaptation of Methylobacterium extorquens AM1 and TK 0001 to Very High Methanol Concentrations. Front Microbiol, 10:1313. doi: 10.3389/fmicb.2019.01313. eCollection 2019.

- Belot L, Albertini A, Gaudin Y. (2019) Structural and cellular biology of rhabdovirus entry. Adv Virus Res, ;104:147-183. doi: 10.1016/bs.aivir.2019.05.003. Epub 2019 Jun 21.

- Bodakuntla S, Jijumon AS, Villablanca C, Gonzalez-Billault C, Janke C. (2019) Microtubule-Associated Proteins: Structuring the Cytoskeleton. Trends Cell Biol, pii: S0962-8924(19)30120-5. doi: 10.1016/j.tcb.2019.07.004. [Epub ahead of print] Review.

- Bordelet H, Dubrana K. (2019) Keep moving and stay in a good shape to find your homologous recombination partner. Curr Genet, 65(1):29-39. doi: 10.1007/s00294-018-0873-1. Epub 2018 Aug 10. Review.

- Bouillier C, Rincheval V, Sitterlin D, Blouquit-Laye S, Desquesnes A, Eléouët JF, Gault E, Rameix-Welti MA (2019) Generation, Amplification, and Titration of Recombinant Respiratory Syncytial Viruses. J Vis Exp. (146). doi: 10.3791/59218.

- Ciardo D, Goldar A, Marheineke K (2019) On the Interplay of the DNA Replication Program and the Intra-S Phase Checkpoint Pathway. Genes, 10, 94. doi: 10.3390/genes10020094.

- Courret C, Gérard PR, Ogereau D, Falque M, Moreau L, Montchamp-Moreau C. (2019) X-chromosome meiotic drive in Drosophila simulans: a QTL approach reveals the complex polygenic determinism of Paris drive suppression. Heredity (Edinb), 122(6):906-915. doi: 10.1038/s41437-018-0163-1. Epub 2018 Dec 5.

- Deng Y, Luo X, Xie M, Bouloc P, Chen C, Jacq A. (2019) The ilvGMEDA operon is regulated by transcription attenuation in Vibrio alginolyticus ZJ-T. Appl Environ Microbiol pii: AEM.00880-19. doi: 10.1128/AEM.00880-19. [Epub ahead of print]

- Devigne A, Meyer L, de la Tour CB, Eugénie N, Sommer S, Servant P. (2019) The absence of the RecN protein suppresses the cellular defects of Deinococcus radiodurans irradiated cells devoid of the PprA protein by limiting recombinational repair of DNA lesions. DNA Repair (Amst), 73:144-154. doi: 10.1016/j.dnarep.2018.11.011. Epub 2018 Nov 28.

- El Banna N, Hatem E, Heneman-Masurel A, Léger T, Baïlle D, Vernis L, Garcia C, Martineau S, Dupuy C, Vagner S, Camadro JM, Huang ME. (2019) Redox modifications of cysteine-containing proteins, cell cycle arrest and translation inhibition: Involvement in vitamin C-induced breast cancer cell death. Redox Biol, 2;26:101290. doi: 10.1016/j.redox.2019.101290. [Epub ahead of print]

- El Sayed F, Roux AL, Sapriel G, Salomon E, Bauer T, Gaillard JL, Rottman M. (2019) Molecular Typing of Multiple Isolates Is Essential to Diagnose Cutibacterium acnes Orthopedic Device-related Infection. Clin Infect Dis, 68(11):1942-1945. doi: 10.1093/cid/ciy952.

- Fogel O, Bugge Tinggaard A, Fagny M, Sigrist N, Roche E, Leclere L, Deleuze JF, Batteux F, Dougados M, Miceli-Richard C, Tost J. (2019) Deregulation of microRNA expression in monocytes and CD4+ T lymphocytes from patients with axial spondyloarthritis. Arthritis Res Ther, 21 (1) 51. doi: 10.1186/s13075-019-1829-7.

- Furci L, Jain R, Stassen J, Berkowitz O, Whelan J, Roquis D, Baillet V, Colot V, Johannes F, Ton J. (2019) Identification and characterisation of hypomethylated DNA loci controlling quantitative resistance in Arabidopsis. Elife, 8. pii: e40655. doi: 10.7554/eLife.40655. [Epub ahead of print]

- Gervason S, Larkem D, Mansour AB, Botzanowski T, Müller CS, Pecqueur L, Le Pavec G, Delaunay-Moisan A, Brun O, Agramunt J, Grandas A, Fontecave M, Schünemann V, Cianférani S, Sizun C, Tolédano MB, D'Autréaux B. (2019) Physiologically relevant reconstitution of iron-sulfur cluster biosynthesis uncovers persulfide-processing functions of ferredoxin-2 and frataxin. Nat Commun, 10(1):3566. doi: 10.1038/s41467-019-11470-9.

- Giordano T, Gadadhar S, Bodakuntla S, Straub J, Leboucher S, Martinez G, Chemlali W, Bosc C, Andrieux A, Bieche I, Arnoult C, Geimer S, Janke C. (2019) Loss of the deglutamylase CCP5 perturbs multiple steps of spermatogenesis and leads to male infertility. J Cell Sci, 132(3). pii: jcs226951. doi: 10.1242/jcs.226951.

- Grandon B, Rincheval-Arnold A, Jah N, Corsi JM, Araujo LM, Glatigny S, Prevost ERoche D, Chiocchia G, Guénal I, Gaumer S, Breban M (2019) HLA-B27 alters BMP/TGFβ signalling in Drosophila, revealing putative pathogenic mechanism for spondyloarthritis. Ann Rheum Dis, doi: 10.1136/annrheumdis-2019-215832. [Epub ahead of print]

- Guérin TM, Béneud C, Barinova N, ... Koszul R, Dubrana K and Marcand S (2019) Condensin-Mediated Chromosome Folding and Internal Telomeres Drive Dicentric Severing by Cytokinesis. Mol Cell, Epub ahead of print. https://www.cell.com/molecular-cell/fulltext/S1097-2765(19)30393-4

- Helleu Q, Courret C, Ogereau D, Burnham KL, Chaminade N, Chakir M, Aulard S, Montchamp-Moreau C. (2019) Sex-Ratio meiotic drive shapes the evolution of the Y chromosome in Drosophila simulans. Mol Biol Evo, pii: msz160. doi: 10.1093/molbev/msz160. [Epub ahead of print]

- Jenzer C, Simionato E, Largeau C, Scarcelli V, Lefebvre C, Legouis R. (2019) Autophagy mediates phosphatidylserine exposure and phagosome degradation during apoptosis through specific functions of GABARAP/LGG-1 and LC3/LGG-2. Autophagy, 15(2):228-241. doi: 10.1080/15548627.2018.1512452.

- Kammerscheit X, Chauvat F, Cassier-Chauvat C. (2019) First in vivo Evidence That Glutathione-S-Transferase Operates in Photo-Oxidative Stress in Cyanobacteria. Front Microbiol, 10:1899. doi: 10.3389/fmicb.2019.01899. eCollection 2019.

- Koch M, Pandi A, Borkowski O, Cardoso Batista A, Faulon JL. (2019) Custom-made transcriptional biosensors for metabolic engineering. Curr Opin Biotechno, 59:78-84. doi: 10.1016/j.copbio.2019.02.016. [Epub ahead of print] Review.

- Kubik S, Bruzzone MJ, Challal D, Dreos R, Mattarocci S, Bucher P, Libri D, Shore D. (2019) Opposing chromatin remodelers control transcription initiation frequency and start site selection. Nat Struct Mol Bio, 26(8):744-754. doi: 10.1038/s41594-019-0273-3. Epub 2019 Aug 5.

- Lévy E, El Banna N, Baïlle D, Heneman-Masurel A, Truchet S, Rezaei H, Huang ME, Béringue V, Martin D, Vernis L. (2019) Causative Links between Protein Aggregation and Oxidative Stress: A Review. Int J Mol Sci., 20(16). pii: E3896. doi: 10.3390/ijms20163896. Review.

- Maroc L1, Fairhead C.1 (2019) A new inducible CRISPR-Cas9 system useful for genome editing and study of double-strand break repair in Candida glabrata. Yeast, doi: 10.1002/yea.3440. [Epub ahead of print]

- Mounkoro P, Michel T, Blandin S, Golinelli M-P, Davioud-Charvet E, Meunier B (2019) Investigating the mode of action of the redox-active antimalarial drug plasmodione using the yeast model. Free Rad Biol Med, DOI:  10.1016/j.freeradbiomed.2019.06.026 

- Noussair L, Salomon E, El Sayed F, Duran C, Bouchand F, Roux AL, Gaillard JL, Bauer T, Rottman M, Dinh A. (2019) Monomicrobial bone and joint infection due to Corynebacterium striatum: literature review and amoxicillin-rifampin combination as treatment perspective. Eur J Clin Microbiol Infect Dis, (7):1269-1278. doi: 10.1007/s10096-019-03542-x. Epub 2019 Mar 22.

- Pandi A, Grigoras I, Borkowski O, Faulon JL. (2019) Optimizing Cell-Free Biosensors to Monitor Enzymatic Production. ACS Synth Bio, 8(8):1952-1957. doi: 10.1021/acssynbio.9b00160. Epub 2019 Aug 2.

- Pandi A, Koch M, Voyvodic PL, Soudier P, Bonnet J, Kushwaha M, Faulon JL (2019) Metabolic perceptrons for neural computing in biological systems. Nat Commun, 10(1):3880. doi: 10.1038/s41467-019-11889-0.

- Perochon J, Grandon B, Roche D, Wintz C, Demay Y, Mignotte B, Szuplewski S* and Gaumer S*(2019) The endoplasmic reticulum unfolded protein response varies depending on the affected region of the tissue but independently from the source of stress. Cell Stress Chaperones, 24, 817-824. doi:10.1007/s12192-019-01009-8

- Petrizzelli M., de Vienne D. and Dillmann C. (2019) Decoupling the Variances of Heterosis and Inbreeding Effects Is Evidenced in Yeast's Life-History and Proteomic Traits. Genetics, 211 (2) 741-75.

- Retureau R, Oguey C, Mauffret O, Hartmann B. (2019) Structural Explorations of NCp7-Nucleic Acid Complexes Give Keys to Decipher the Binding Process. J Mol Bio, 431 (10) 1966-1980. doi: 10.1016/j.jmb.2019.03.002. Epub 2019 Mar 12.

- Rubio T, Oyanedel D, Labreuche Y, Toulza E, Luo X, Bruto M, Chaparro C, Torres M, de Lorgeril J, Haffner P, Vidal-Dupiol J, Lagorce A, Petton B, Mitta G, Jacq A, Le Roux F, Charrière GM, Destoumieux-Garzón D. (2019) Species-specific mechanisms of cytotoxicity toward immune cells determine the successful outcome of Vibrio infections. Proc Natl Acad Sci U S A, 116(28):14238-14247. doi: 10.1073/pnas.1905747116. Epub 2019 Jun 20.

- Sartori-Rupp A, Cordero Cervantes D, Pepe A, Gousset K, Delage E, Corroyer-Dulmont S, Schmitt C, Krijnse-Locker J, Zurzolo C (2019). Correlative cryo-electron microscopy reveals the structure of TNTs in neuronal cells. Nat Commun, 10(1):342. doi: 10.1038/s41467-018-08178-7.

- Souphron J, Bodakuntla S, Jijumon AS, Lakisic G, Gautreau AM, Janke C, Magiera MM. (2019) Purification of tubulin with controlled post-translational modifications by polymerization-depolymerization cycles. Nat Protoc, 14(5):1634-1660. doi: 10.1038/s41596-019-0153-7. Epub 2019 Apr 17.

- Veyssière M, Perea J, Michou L, Boland A, Caloustian C, Olaso R, Deleuze J-F, Cornelis F, Petit-Teiseira E, Chaudru, V (2019) A novel nonsense variant in SUPT20H gene associated with Rheumatoid Arthritis identified by Whole Exome Sequencing of multiplex families. PLoS ONE 14(3): e0213387. https://doi.org/10.1371/journal.pone.0213387

- Voyvodic PL, Pandi A, Koch M, Conejero I, Valjent E, Courtet P, Renard E, Faulon JL, Bonnet J. (2019) Plug-and-play metabolic transducers expand the chemical detection space of cell-free biosensors. Nat Commun, 10(1):1697. doi: 10.1038/s41467-019-09722-9.